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<meta name="author" content="Jennifer O’Malley" />
<meta name="author" content="Casey S. Greene" />
<meta name="author" content="Jaclyn N. Taroni" />
<meta name="dcterms.date" content="2024-03-22" />
<meta name="dcterms.date" content="2024-03-25" />
<meta name="keywords" content="single-cell RNA-seq, single-nuclei RNA-seq, pediatric cancer, resource, Nextflow, open science, reproducibility" />
<title>The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors</title>
<style>
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<meta name="citation_title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta property="og:title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta property="twitter:title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta name="dc.date" content="2024-03-22" />
<meta name="citation_publication_date" content="2024-03-22" />
<meta property="article:published_time" content="2024-03-22" />
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<meta name="dc.date" content="2024-03-25" />
<meta name="citation_publication_date" content="2024-03-25" />
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<meta name="citation_language" content="en-US" />
<meta name="dc.relation.ispartof" content="Manubot" />
Expand Down Expand Up @@ -142,7 +142,7 @@ <h1 class="title">The Single-cell Pediatric Cancer Atlas: Data portal and open-s
(<a href="https://AlexsLemonade.github.io/ScPCA-manuscript/v/ebbeac5b02f000f5f0c505e4588f2fbd458d4d02/">permalink</a>)
was automatically generated
from <a href="https://github.com/AlexsLemonade/ScPCA-manuscript/tree/ebbeac5b02f000f5f0c505e4588f2fbd458d4d02">AlexsLemonade/ScPCA-manuscript@ebbeac5</a>
on March 22, 2024.
on March 25, 2024.
</em></small></p>
<h2 id="authors">Authors</h2>
<ul>
Expand Down Expand Up @@ -1126,7 +1126,7 @@ <h2 class="page_break_before" id="references">References</h2>
<div class="csl-left-margin">55. </div><div class="csl-right-inline"><strong>Cellxgene Data Portal</strong> <div class="csl-block">Cellxgene Data Portal</div> <a href="https://cellxgene.cziscience.com/">https://cellxgene.cziscience.com/</a></div>
</div>
<div id="ref-QgMCMjVA" class="csl-entry" role="doc-biblioentry">
<div class="csl-left-margin">56. </div><div class="csl-right-inline"><a href="https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md">https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md</a></div>
<div class="csl-left-margin">56. </div><div class="csl-right-inline"><strong>single-cell-curation/schema/3.0.0/schema.md at main · chanzuckerberg/single-cell-curation</strong> <div class="csl-block">GitHub</div> <a href="https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md">https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md</a></div>
</div>
<div id="ref-91inc6cK" class="csl-entry" role="doc-biblioentry">
<div class="csl-left-margin">57. </div><div class="csl-right-inline"><strong>Alignment and mapping methodology influence transcript abundance estimation</strong> <div class="csl-block">Avi Srivastava, Laraib Malik, Hirak Sarkar, Mohsen Zakeri, Fatemeh Almodaresi, Charlotte Soneson, Michael I Love, Carl Kingsford, Rob Patro</div> <em>Genome Biology</em> (2020-09-07) <a href="https://doi.org/gg98sd">https://doi.org/gg98sd</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1186/s13059-020-02151-8">10.1186/s13059-020-02151-8</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/32894187">32894187</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487471">PMC7487471</a></div></div>
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<meta name="author" content="Jennifer O’Malley" />
<meta name="author" content="Casey S. Greene" />
<meta name="author" content="Jaclyn N. Taroni" />
<meta name="dcterms.date" content="2024-03-22" />
<meta name="dcterms.date" content="2024-03-25" />
<meta name="keywords" content="single-cell RNA-seq, single-nuclei RNA-seq, pediatric cancer, resource, Nextflow, open science, reproducibility" />
<title>The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors</title>
<style>
Expand Down Expand Up @@ -62,11 +62,11 @@
<meta name="citation_title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta property="og:title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta property="twitter:title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta name="dc.date" content="2024-03-22" />
<meta name="citation_publication_date" content="2024-03-22" />
<meta property="article:published_time" content="2024-03-22" />
<meta name="dc.modified" content="2024-03-22T19:29:18+00:00" />
<meta property="article:modified_time" content="2024-03-22T19:29:18+00:00" />
<meta name="dc.date" content="2024-03-25" />
<meta name="citation_publication_date" content="2024-03-25" />
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<meta name="dc.modified" content="2024-03-25T14:07:08+00:00" />
<meta property="article:modified_time" content="2024-03-25T14:07:08+00:00" />
<meta name="dc.language" content="en-US" />
<meta name="citation_language" content="en-US" />
<meta name="dc.relation.ispartof" content="Manubot" />
Expand Down Expand Up @@ -142,7 +142,7 @@ <h1 class="title">The Single-cell Pediatric Cancer Atlas: Data portal and open-s
(<a href="https://AlexsLemonade.github.io/ScPCA-manuscript/v/ebbeac5b02f000f5f0c505e4588f2fbd458d4d02/">permalink</a>)
was automatically generated
from <a href="https://github.com/AlexsLemonade/ScPCA-manuscript/tree/ebbeac5b02f000f5f0c505e4588f2fbd458d4d02">AlexsLemonade/ScPCA-manuscript@ebbeac5</a>
on March 22, 2024.
on March 25, 2024.
</em></small></p>
<h2 id="authors">Authors</h2>
<ul>
Expand Down Expand Up @@ -1126,7 +1126,7 @@ <h2 class="page_break_before" id="references">References</h2>
<div class="csl-left-margin">55. </div><div class="csl-right-inline"><strong>Cellxgene Data Portal</strong> <div class="csl-block">Cellxgene Data Portal</div> <a href="https://cellxgene.cziscience.com/">https://cellxgene.cziscience.com/</a></div>
</div>
<div id="ref-QgMCMjVA" class="csl-entry" role="doc-biblioentry">
<div class="csl-left-margin">56. </div><div class="csl-right-inline"><a href="https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md">https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md</a></div>
<div class="csl-left-margin">56. </div><div class="csl-right-inline"><strong>single-cell-curation/schema/3.0.0/schema.md at main · chanzuckerberg/single-cell-curation</strong> <div class="csl-block">GitHub</div> <a href="https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md">https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md</a></div>
</div>
<div id="ref-91inc6cK" class="csl-entry" role="doc-biblioentry">
<div class="csl-left-margin">57. </div><div class="csl-right-inline"><strong>Alignment and mapping methodology influence transcript abundance estimation</strong> <div class="csl-block">Avi Srivastava, Laraib Malik, Hirak Sarkar, Mohsen Zakeri, Fatemeh Almodaresi, Charlotte Soneson, Michael I Love, Carl Kingsford, Rob Patro</div> <em>Genome Biology</em> (2020-09-07) <a href="https://doi.org/gg98sd">https://doi.org/gg98sd</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1186/s13059-020-02151-8">10.1186/s13059-020-02151-8</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/32894187">32894187</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487471">PMC7487471</a></div></div>
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<meta name="author" content="Jennifer O’Malley" />
<meta name="author" content="Casey S. Greene" />
<meta name="author" content="Jaclyn N. Taroni" />
<meta name="dcterms.date" content="2024-03-22" />
<meta name="dcterms.date" content="2024-03-25" />
<meta name="keywords" content="single-cell RNA-seq, single-nuclei RNA-seq, pediatric cancer, resource, Nextflow, open science, reproducibility" />
<title>The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors</title>
<style>
Expand Down Expand Up @@ -62,11 +62,11 @@
<meta name="citation_title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta property="og:title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta property="twitter:title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
<meta name="dc.date" content="2024-03-22" />
<meta name="citation_publication_date" content="2024-03-22" />
<meta property="article:published_time" content="2024-03-22" />
<meta name="dc.modified" content="2024-03-22T19:29:18+00:00" />
<meta property="article:modified_time" content="2024-03-22T19:29:18+00:00" />
<meta name="dc.date" content="2024-03-25" />
<meta name="citation_publication_date" content="2024-03-25" />
<meta property="article:published_time" content="2024-03-25" />
<meta name="dc.modified" content="2024-03-25T14:07:08+00:00" />
<meta property="article:modified_time" content="2024-03-25T14:07:08+00:00" />
<meta name="dc.language" content="en-US" />
<meta name="citation_language" content="en-US" />
<meta name="dc.relation.ispartof" content="Manubot" />
Expand Down Expand Up @@ -142,7 +142,7 @@ <h1 class="title">The Single-cell Pediatric Cancer Atlas: Data portal and open-s
(<a href="https://AlexsLemonade.github.io/ScPCA-manuscript/v/ebbeac5b02f000f5f0c505e4588f2fbd458d4d02/">permalink</a>)
was automatically generated
from <a href="https://github.com/AlexsLemonade/ScPCA-manuscript/tree/ebbeac5b02f000f5f0c505e4588f2fbd458d4d02">AlexsLemonade/ScPCA-manuscript@ebbeac5</a>
on March 22, 2024.
on March 25, 2024.
</em></small></p>
<h2 id="authors">Authors</h2>
<ul>
Expand Down Expand Up @@ -1126,7 +1126,7 @@ <h2 class="page_break_before" id="references">References</h2>
<div class="csl-left-margin">55. </div><div class="csl-right-inline"><strong>Cellxgene Data Portal</strong> <div class="csl-block">Cellxgene Data Portal</div> <a href="https://cellxgene.cziscience.com/">https://cellxgene.cziscience.com/</a></div>
</div>
<div id="ref-QgMCMjVA" class="csl-entry" role="doc-biblioentry">
<div class="csl-left-margin">56. </div><div class="csl-right-inline"><a href="https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md">https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md</a></div>
<div class="csl-left-margin">56. </div><div class="csl-right-inline"><strong>single-cell-curation/schema/3.0.0/schema.md at main · chanzuckerberg/single-cell-curation</strong> <div class="csl-block">GitHub</div> <a href="https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md">https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md</a></div>
</div>
<div id="ref-91inc6cK" class="csl-entry" role="doc-biblioentry">
<div class="csl-left-margin">57. </div><div class="csl-right-inline"><strong>Alignment and mapping methodology influence transcript abundance estimation</strong> <div class="csl-block">Avi Srivastava, Laraib Malik, Hirak Sarkar, Mohsen Zakeri, Fatemeh Almodaresi, Charlotte Soneson, Michael I Love, Carl Kingsford, Rob Patro</div> <em>Genome Biology</em> (2020-09-07) <a href="https://doi.org/gg98sd">https://doi.org/gg98sd</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1186/s13059-020-02151-8">10.1186/s13059-020-02151-8</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/32894187">32894187</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487471">PMC7487471</a></div></div>
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