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## Code and data availability | ||
## Acknowledgments | ||
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All summarized gene expression data and de-identified metadata are available for download on the ScPCA Portal, <https://scpca.alexslemonade.org/>. | ||
We thank the data generators and submitters of the Single-cell Pediatric Cancer Atlas. | ||
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Documentation for the Portal can be found at <https://scpca.readthedocs.io>. | ||
This work was funded through the Alex's Lemonade Stand Foundation Childhood Cancer Data Lab and Childhood Cancer Data Lab Postdoctoral Fellowship (SMF). | ||
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All original code was developed within the following repositories and is publicly available as follows: | ||
## Author Contributions | ||
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- The `scpca-nf` workflow used to process all samples available on the Portal can be found at <https://github.com/AlexsLemonade/scpca-nf>. | ||
- The Single-cell Pediatric Cancer Atlas Portal code can be found at <https://github.com/AlexsLemonade/scpca-portal>. | ||
- Benchmarking of tools used to build `scpca-nf` can be found at <https://github.com/AlexsLemonade/alsf-scpca/tree/main/analysis> and <https://github.com/AlexsLemonade/sc-data-integration/tree/main/celltype_annotation>. | ||
- All code for the underlying figures can be found at <https://github.com/AlexsLemonade/scpca-paper-figures>. | ||
- The manuscript can be found at <https://github.com/AlexsLemonade/ScPCA-manuscript>. | ||
Author|Contributions| |---|---|{% for author in manubot.authors %} |{{author.name}}|{% if author.contributions is string %}{{author.contributions}}{% else %}{% for contribution in author.contributions %}{{ contribution }}{% if not loop.last %}, {% endif %}{% endfor %}{% endif %}|{% endfor %} | ||
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## Declarations of Interest | ||
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AGH, JAS, SJS, DSM, DVP, NI, AY, KGW, CJB, JO, and JNT are or were employees of Alex's Lemonade Stand Foundation, a sponsor of this research. |