Merge pull request #105 from AlexsLemonade/jashapiro/spelling-fail

[ci skip] This build is based on e95df63. This commit was created by the following CI build and job: https://github.com/AlexsLemonade/ScPCA-manuscript/commit/e95df636601c92ea7acaeb0efb75261593b3da11/checks https://github.com/AlexsLemonade/ScPCA-manuscript/actions/runs/8452300971
AlexsLemonade · Mar 27, 2024 · e3457e4 · e3457e4
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diff --git a/manuscript.docx b/manuscript.docx
diff --git a/manuscript.html b/manuscript.html
@@ -17,7 +17,7 @@
   <meta name="author" content="Jennifer O’Malley" />
   <meta name="author" content="Casey S. Greene" />
   <meta name="author" content="Jaclyn N. Taroni" />
-  <meta name="dcterms.date" content="2024-03-25" />
+  <meta name="dcterms.date" content="2024-03-27" />
   <meta name="keywords" content="single-cell RNA-seq, single-nuclei RNA-seq, pediatric cancer, resource, Nextflow, open science, reproducibility" />
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   <meta property="twitter:title" content="The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors" />
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-  <meta name="dc.modified" content="2024-03-25T17:56:14+00:00" />
-  <meta property="article:modified_time" content="2024-03-25T17:56:14+00:00" />
+  <meta name="dc.date" content="2024-03-27" />
+  <meta name="citation_publication_date" content="2024-03-27" />
+  <meta property="article:published_time" content="2024-03-27" />
+  <meta name="dc.modified" content="2024-03-27T13:09:00+00:00" />
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@@ -120,9 +120,9 @@
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+  <link rel="alternate" type="text/html" href="https://AlexsLemonade.github.io/ScPCA-manuscript/v/e95df636601c92ea7acaeb0efb75261593b3da11/" />
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@@ -139,10 +139,10 @@ <h1 class="title">The Single-cell Pediatric Cancer Atlas: Data portal and open-s
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://AlexsLemonade.github.io/ScPCA-manuscript/v/8558b4ff6642aea1bc281adf72273b014a0aae57/">permalink</a>)
+(<a href="https://AlexsLemonade.github.io/ScPCA-manuscript/v/e95df636601c92ea7acaeb0efb75261593b3da11/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/AlexsLemonade/ScPCA-manuscript/tree/8558b4ff6642aea1bc281adf72273b014a0aae57">AlexsLemonade/ScPCA-manuscript@8558b4f</a>
-on March 25, 2024.
+from <a href="https://github.com/AlexsLemonade/ScPCA-manuscript/tree/e95df636601c92ea7acaeb0efb75261593b3da11">AlexsLemonade/ScPCA-manuscript@e95df63</a>
+on March 27, 2024.
 </em></small></p>
 <h2 id="authors">Authors</h2>
 <ul>
@@ -1084,13 +1084,13 @@ <h2 class="page_break_before" id="references">References</h2>
 <div class="csl-left-margin">17. </div><div class="csl-right-inline"><strong>Home - Taxonomy - NCBI</strong> <a href="https://www.ncbi.nlm.nih.gov/taxonomy">https://www.ncbi.nlm.nih.gov/taxonomy</a></div>
 </div>
 <div id="ref-pZyZllZn" class="csl-entry" role="doc-biblioentry">
-<div class="csl-left-margin">18. </div><div class="csl-right-inline"><strong>Mondo: Unifying diseases for the world, by the world</strong> <div class="csl-block">Nicole A Vasilevsky, Nicolas A Matentzoglu, Sabrina Toro, Joseph E Flack IV, Harshad Hegde, Deepak R Unni, Gioconda F Alyea, Joanna S Amberger, Larry Babb, James P Balhoff, … Melissa A Haendel</div> <em>Cold Spring Harbor Laboratory</em> (2022-04-16) <a href="https://doi.org/gqx27c">https://doi.org/gqx27c</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1101/2022.04.13.22273750">10.1101/2022.04.13.22273750</a></div></div>
+<div class="csl-left-margin">18. </div><div class="csl-right-inline"><strong>Mondo: Unifying diseases for the world, by the world</strong> <div class="csl-block">Nicole A Vasilevsky, Nicolas A Matentzoglu, Sabrina Toro, Joseph E Flack, Harshad Hegde, Deepak R Unni, Gioconda F Alyea, Joanna S Amberger, Larry Babb, James P Balhoff, … Melissa A Haendel</div> <em>medRxiv</em> (2022-05-03) <a href="https://doi.org/gqx27c">https://doi.org/gqx27c</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1101/2022.04.13.22273750">10.1101/2022.04.13.22273750</a></div></div>
 </div>
 <div id="ref-ZPHZMiua" class="csl-entry" role="doc-biblioentry">
 <div class="csl-left-margin">19. </div><div class="csl-right-inline"><strong>Ontology Lookup Service (OLS)</strong> <a href="https://www.ebi.ac.uk/ols4/ontologies/mondo">https://www.ebi.ac.uk/ols4/ontologies/mondo</a></div>
 </div>
 <div id="ref-swLRou1q" class="csl-entry" role="doc-biblioentry">
-<div class="csl-left-margin">20. </div><div class="csl-right-inline"><strong>Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon</strong> <div class="csl-block">Melissa A Haendel, James P Balhoff, Frederic B Bastian, David C Blackburn, Judith A Blake, Yvonne Bradford, Aurelie Comte, Wasila M Dahdul, Thomas A Dececchi, Robert E Druzinsky, … Christopher J Mungall</div> <em>Journal of Biomedical Semantics</em> (2014) <a href="https://doi.org/gtnrz4">https://doi.org/gtnrz4</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1186/2041-1480-5-21">10.1186/2041-1480-5-21</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/25009735">25009735</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089931">PMC4089931</a></div></div>
+<div class="csl-left-margin">20. </div><div class="csl-right-inline"><strong>Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon</strong> <div class="csl-block">Melissa A Haendel, James P Balhoff, Frederic B Bastian, David C Blackburn, Judith A Blake, Yvonne Bradford, Aurelie Comte, Wasila M Dahdul, Thomas A Dececchi, Robert E Druzinsky, … Christopher J Mungall</div> <em>Journal of Biomedical Semantics</em> (2014-05-19) <a href="https://doi.org/gtnrz4">https://doi.org/gtnrz4</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1186/2041-1480-5-21">10.1186/2041-1480-5-21</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/25009735">25009735</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4089931">PMC4089931</a></div></div>
 </div>
 <div id="ref-TOC8jpgh" class="csl-entry" role="doc-biblioentry">
 <div class="csl-left-margin">21. </div><div class="csl-right-inline"><strong>Uberon, an integrative multi-species anatomy ontology</strong> <div class="csl-block">Christopher J Mungall, Carlo Torniai, Georgios V Gkoutos, Suzanna E Lewis, Melissa A Haendel</div> <em>Genome Biology</em> (2012) <a href="https://doi.org/fxx6qr">https://doi.org/fxx6qr</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1186/gb-2012-13-1-r5">10.1186/gb-2012-13-1-r5</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/22293552">22293552</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334586">PMC3334586</a></div></div>

diff --git a/manuscript.md b/manuscript.md
@@ -9,7 +9,7 @@ keywords:
 - open science
 - reproducibility
 lang: en-US
-date-meta: '2024-03-25'
+date-meta: '2024-03-27'
 author-meta:
 - Allegra G. Hawkins
 - Joshua A. Shapiro
@@ -35,11 +35,11 @@ header-includes: |
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+  <meta property="article:published_time" content="2024-03-27" />
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 <small><em>
 This manuscript
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diff --git a/spelling-error-locations.txt b/spelling-error-locations.txt
@@ -1,18 +1,6 @@
 content/03.results.md:16:TODO
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 SMF
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