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lead with uniform processing #107

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Apr 1, 2024
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lead with uniform processing #107

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lead with uniform processing
cgreene Mar 29, 2024
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jaclyn-taroni Apr 1, 2024
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Merge branch 'main' into patch-3
jaclyn-taroni Apr 1, 2024
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2 changes: 1 addition & 1 deletion content/03.results.md
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Expand Up @@ -35,7 +35,7 @@ The project card also indicates the type(s) of sequencing performed, including t

## Uniform processing of data available on the ScPCA Portal

All data available on the Portal was uniformly processed using [`scpca-nf`](https://github.com/AlexsLemonade/scpca-nf), an open-source and efficient Nextflow [@doi:10.1038/nbt.3820] workflow for quantifying single-cell and single-nuclei RNA-seq data.
We developed [`scpca-nf`](https://github.com/AlexsLemonade/scpca-nf), an open-source and efficient Nextflow [@doi:10.1038/nbt.3820] workflow for quantifying single-cell and single-nuclei RNA-seq data and processed all data available on the Portal with it.
Using Nextflow as the backbone for the `scpca-nf` workflow ensures both reproducibility and portability.
All dependencies for the workflow are handled automatically, as each process in the workflow is run in a Docker container.
Nextflow is compatible with various computing environments, including high-performance computing clusters and cloud-based computing, allowing users to run the workflow in their preferred environment.
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