Adding my edits to introduction #22
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Honestly, I don't have very many additional comments on the changes that you made here. Most of it just seems to be some rewording and it sounds a lot better. I agree with moving up that one sentence., so I can go ahead and do that and then we can get this merged in to my branch unless you have other things you wanted me to look at here?
content/02.introduction.md
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| To ensure that all current and future data on the Portal are uniformly processed, we created scpca-nf, a Nextflow-based open-source pipeline (https://github.com/AlexsLemonade/scpca-nf). | ||
| The scpca-nf workflow uses alevin-fry for fast and efficient quantification of gene expression for all samples on the Portal, including single-cell RNA-seq data and any associated ADT/CITE-seq or cell hash data, spatial transcriptomics data, and bulk RNA-seq data. | ||
| <!-- TODO: Move uniformly processed value-add explanation up to previous paragraph? --> | ||
| Ensuring all data on the Portal are uniformly processed allows users to perform analysis across multiple samples and projects without having to do any re-processing. |
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If the comments you have here mean you want to move this sentence to where you have the above comment, I'm good with that. I think it makes sense.
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So my journey with 54ca43e was that I moved the sentence, reworded it, and then decided I wanted to put the reworded sentence back where it was 🎢
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If you agree with all the changes here, feel free to merge @allyhawkins and then I'll approve #18 |
Stacked on #18. @allyhawkins, we might want to briefly touch base about the best way to incorporate these edits; I don't necessarily expect you to accept them wholesale and merge this in.
The content is largely the same, in my opinion. This is mostly cutting words and rearranging a bit. You will notice I use HTML comments to indicate a question about where we should discuss the benefits of uniformly processed data.