Add captions for figures 3 & 4 #51
Conversation
There was a problem hiding this comment.
Just a few comments. We should figure out how we are dealing with SCE abbreviations. I haven't been using them in the text, but I can use them so that readers are familiar with the term. That being said, I think we should still do what you have in Figure 2 where you have the full name and abbreviation the first time you mention SCEs.
content/100.figure-table-legends.md
Outdated
|
|
||
| {#fig:fig3 width="7in"} | ||
|
|
||
| A. File download structure for an ScPCA Portal project download in `SCE` format. |
There was a problem hiding this comment.
| A. File download structure for an ScPCA Portal project download in `SCE` format. | |
| A. File download structure for an ScPCA Portal project download in `SingleCellExperiment` format. |
Generally I haven't been abbreviating this in the text so I think for the legends we could use the full name too. I know I already approved a legend with the abbreviation, but I think we should pick one approach and match the text.
There was a problem hiding this comment.
I now realize that we are using SCE in the figures themselves. Can we just be sure to have SingleCellExperiment(SCE) in each of the legends?
There was a problem hiding this comment.
For the fig 4 legend, it didn't seem like there was really a place for this. The only time I use SCE is to refer to literal items in the workflow figure. Do you still think we need it?
There was a problem hiding this comment.
fyi the line above is now "SingleCellExperiment (SCE)"
|
Click the link below to download the manuscript build as a ZIP file. |
|
Click the link below to download the manuscript build as a ZIP file. |
|
Click the link below to download the manuscript build as a ZIP file. |
| {#fig:fig4 width="7in"} | ||
|
|
||
| A. Expanded view of the process for adding cell type annotations within `scpca-nf`, as introduced in Figure 2A. | ||
| Cell type annotation is performed on the `Processed SCE Object`. |
There was a problem hiding this comment.
Because you use the icon labels like this to describe all the objects throughout the figure legends I think you can leave it.
|
Click the link below to download the manuscript build as a ZIP file. |
|
Click the link below to download the manuscript build as a ZIP file. |
Closes #12
Closes #13
Stacked on #36
This PR adds the caption (I seem to always call it legend but I never mean legend...) for figures 3-4.