AH add round robin edits #88
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jaclyn-taroni
approved these changes
Mar 18, 2024
content/02.introduction.md
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| Here, we present the Single-cell Pediatric Cancer Atlas as a resource for all pediatric cancer researchers. | ||
| The ScPCA Portal provides downloads ready for immediate use, allowing researchers to skip time-consuming data re-processing and wrangling steps. | ||
| We provide comprehensive documentation about data processing and the contents of files on the portal, including a guide to getting started working with an ScPCA dataset (https://scpca.readthedocs.io/). | ||
| We provide comprehensive documentation about data processing and the contents of files on the portal, including a guide to getting started working with a ScPCA dataset (https://scpca.readthedocs.io/). |
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I believe "an" is correct because "ScPCA" is pronounced starting with a vowel sound:
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| We provide comprehensive documentation about data processing and the contents of files on the portal, including a guide to getting started working with a ScPCA dataset (https://scpca.readthedocs.io/). | |
| We provide comprehensive documentation about data processing and the contents of files on the portal, including a guide to getting started working with an ScPCA dataset (https://scpca.readthedocs.io/). |
https://blog.apastyle.org/apastyle/2012/04/using-a-or-an-with-acronyms-and-abbreviations.html
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Okay, I wasn't sure because this is the only place we were using an instead of a before ScPCA project. I can update to use an everywhere.
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I am willing to bet I wrote this, then. 🤷
| Unlike its predecessor, bulk RNA-seq, which averages the profiles of all cells within a sample, single-cell technology quantifies gene expression in individual cells. | ||
| Tumors are known to be transcriptionally heterogeneous, so many studies have highlighted the importance of using single-cell RNA-seq in studying tumor samples [@doi:10.1101/gr.190595.115]. | ||
| Researchers can use tumor single-cell RNA-seq to analyze and identify individual cell populations that may play important roles in tumor growth, resistance, and metastasis [@doi:10.1126/science.1254257]. | ||
| Additionally, single-cell RNA-seq data provides insight into how tumor cells may be interacting with normal cells in the tumor microenvironment[@10.1038/s41588-022-01141-9]. | ||
| Researchers can use single-cell RNA-seq of samples obtained from patient tumors to analyze and identify individual cell populations that may play important roles in tumor growth, resistance, and metastasis [@doi:10.1126/science.1254257]. |
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I am not sure I find this change clarifying (and it is certainly longer), but we can see what others think.
Co-authored-by: Jaclyn Taroni <[email protected]>
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Click the link below to download the manuscript build as a ZIP file. |
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Here I'm adding in a few edits from reading through the whole paper. They are generally pretty minimal, with most of my edits fixing typos, making formatting consistent when we refer to things, adding backticks, and then adding in the figure links. There are a few places where I adjusted the wording or rearranged a sentence, but that is pretty minimal.
The one thing I didn't do here was update the HTO workflow diagram and legend description. Right now we are showing
HTO FASTQas input to demultiplexing, but not as input toalevin-fry. I'm going to make some adjustments and file as a PR toscpca-paper-figuresand then will come back and update the legend separately.