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This directory contains scripts to download and preprocess data used within the rOpenScPCA package. | ||
There are also notebooks that explore some of the prepared datasets for exploration. | ||
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## Building Gene References | ||
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- The `build_gene_references.R` script creates a table of Ensembl id to gene symbol references. | ||
It starts with the example ScPCA-formatted SCE object stored in test data, extracting the table of gene ids and gene symbols. | ||
This is combined with the reference information extracted from example 10x Genomics datasets. | ||
The full table is saved in `data/scpca_gene_reference.rda`. | ||
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- The `explore_gene_references.Rmd` notebook explores the resulting gene references table a bit to see where some of the conversions differ among different references. |