add species taxonomy id

AlexsLemonade · Sep 27, 2023 · 67efe9b · 67efe9b
1 parent 3374b30
commit 67efe9b
Showing 1 changed file with 9 additions and 9 deletions.
diff --git a/config/organism_strain_mapping.csv b/config/organism_strain_mapping.csv
@@ -1,9 +1,9 @@
-organism,ensembl_division,strain,assembly
-PSEUDOMONAS_AERUGINOSA,EnsemblBacteria,PAO1,ASM676v1
-CANDIDA_ALBICANS,EnsemblFungi,SC5314,Cand_albi_SC5314_V4
-ESCHERICHIA_COLI,EnsemblBacteria,ATCC 25922,Escherichia coli ATCC 25922
-STAPHYLOCOCCUS_AUREUS,EnsemblBacteria,USA300_FPR3757,ASM1346v1
-STREPTOCOCCUS_PNEUMONIAE,EnsemblBacteria,TIGR4 ATCC BAA-334,ASM688v1
-STENOTROPHOMONAS_MALTOPHILIA,EnsemblBacteria,K279a,ASM7248v1
-ASPERGILLUS_FUMIGATUS,EnsemblFungi,Af293,ASM265v1
-KLEBSIELLA_PNEUMONIAE,EnsemblBacteria,ATCC 700721 MGH 78578,ASM1630v1
+organism,species_taxonomy_id,ensembl_division,strain,assembly
+PSEUDOMONAS_AERUGINOSA,287,EnsemblBacteria,PAO1,ASM676v1
+CANDIDA_ALBICANS,5476,EnsemblFungi,SC5314,Cand_albi_SC5314_V4
+ESCHERICHIA_COLI,562,EnsemblBacteria,ATCC 25922,Escherichia coli ATCC 25922
+STAPHYLOCOCCUS_AUREUS,1280,EnsemblBacteria,USA300_FPR3757,ASM1346v1
+STREPTOCOCCUS_PNEUMONIAE,1313,EnsemblBacteria,TIGR4 ATCC BAA-334,ASM688v1
+STENOTROPHOMONAS_MALTOPHILIA,40324,EnsemblBacteria,K279a,ASM7248v1
+ASPERGILLUS_FUMIGATUS,746128,EnsemblFungi,Af293,ASM265v1
+KLEBSIELLA_PNEUMONIAE,573,EnsemblBacteria,ATCC 700721 MGH 78578,ASM1630v1