Link updates for rnaseq & pathway cheatsheets #787
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sjspielman
approved these changes
Aug 5, 2024
| Read the `SummarizedExperiment` package documentation [**here**](http://bioconductor.org/packages/release/bioc/manuals/SummarizedExperiment/man/SummarizedExperiment.pdf), and the package vignette by Morgan _et al._ [**here**](https://www.bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html). | ||
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| Read the [`tximeta` package documentation](https://bioconductor.org/packages/release/bioc/manuals/tximeta/man/tximeta.pdf), and the [package vignette by Love _et al._](https://bioconductor.org/packages/devel/bioc/vignettes/tximeta/inst/doc/tximeta.html). | ||
| Read the [`SummarizedExperiment` package documentation](http://bioconductor.org/packages/release/bioc/manuals/SummarizedExperiment/man/SummarizedExperiment.pdf), and the [package vignette by Morgan _et al._](https://www.bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html). |
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| Read the [`SummarizedExperiment` package documentation](http://bioconductor.org/packages/release/bioc/manuals/SummarizedExperiment/man/SummarizedExperiment.pdf), and the [package vignette by Morgan _et al._](https://www.bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html). | |
| Read the [`SummarizedExperiment` package documentation (PDF)](http://bioconductor.org/packages/release/bioc/manuals/SummarizedExperiment/man/SummarizedExperiment.pdf), and the [package vignette by Morgan _et al._](https://www.bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html). |
Co-authored-by: Stephanie Spielman <[email protected]> Co-authored-by: Jaclyn Taroni <[email protected]>
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This PR is part of #781 and #782, but does not necessarily close them.
The goal was to update all links to more recent versions of packages where possible, and to make the links more consistent with updates to the intro cheatsheet. This means that all rdocumentation.org links were updated to rdrr.io or tidyverse.org locations. Usually this is just to the CRAN or Bioconductor page on rdrr.io, but notably in the case of
gsea, I used the github package page, because that was the only one that has the current version of the relevant functions.I expect to confirm that all the functions we need are included as part of #777, #778, #780, after which I will close #781. I will leave #782 for @jaclyn-taroni