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Updated README files #819

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merged 9 commits into from
Dec 4, 2024
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@sjspielman sjspielman commented Dec 3, 2024

Closes #817

This PR updates several README files:

  • In scRNA-seq-advanced/setup/README.md, I added sections for the new ewing-sarcoma and wilms-tumor datasets.
  • In scRNA-seq-advanced/README.md, I updated the notebook list. Since some of the exercises are still in progress, I am opening this PR as a draft. Once we are 100% sure about these files, I'll mark this ready for review.
    • While I was updating* this, I noticed we had a stale docker link in many of the module READMEs, and we still referred to ourselves as CCDL in a few spots too. I therefore updated docker links to point to the Dockerfile (should I instead link to docker hub perhaps?), and I updated from CCDL -> Childhood Cancer Data Lab.

@sjspielman sjspielman marked this pull request as ready for review December 4, 2024 21:14
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All expected files are now in this repo, so this is ready for review!

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@jaclyn-taroni jaclyn-taroni left a comment

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One edit but I don't need to see this again 👍🏻

scRNA-seq-advanced/README.md Outdated Show resolved Hide resolved
@sjspielman sjspielman merged commit c383546 into master Dec 4, 2024
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@sjspielman sjspielman deleted the sjspielman/817-scadvanced-readmes branch December 4, 2024 21:49
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Update scRNA-seq-advanced README
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