Updating docker build

AndersenLab · Jul 31, 2024 · 736eefd · 736eefd
1 parent 77c79e7
commit 736eefd
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Showing 2 changed files with 5 additions and 1 deletion.
diff --git a/Dockerfile b/Dockerfile
@@ -16,4 +16,4 @@ RUN conda config --add channels bioconda \
 ENV PATH /opt/conda/envs/vcf-kit/bin:${PATH}
 RUN conda env export --name vcf-kit > vcf-kit.yml
 LABEL Name="vcf-kit" Author="Daniel Cook"
-RUN apt-get update && apt-get install -y procps
+RUN apt-get update && apt-get install -y procps
diff --git a/vcfkit/phylo.py b/vcfkit/phylo.py
@@ -71,6 +71,10 @@ def first(s):
             Generate a phylogenetic tree using an aligned fasta with muscle.
             """
 
+            ########
+            # Consider biotite to replace deprecated --maketree function in muscle 
+            ########
+
             # Check for muscle dependency
             check_program_exists("muscle")
             fasta = ""