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Rstudio committed Oct 13, 2020
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7 changes: 7 additions & 0 deletions README.md
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# SensorOverlord

**Source:**
[![GitHub Repo](https://img.shields.io/badge/GitHub%20Repository-SensorOverlord-blue.svg)](https://github.com/apfeldlab/sensoroverlord)

**Build:**
[![Build Status](https://travis-ci.com/ApfeldLab/SensorOverlord.svg?branch=master&status=passed)](https://travis-ci.com/github/ApfeldLab/SensorOverlord)
[![codecov](https://codecov.io/gh/apfeldlab/sensoroverlord/branch/master/graph/badge.svg)](https://codecov.io/gh/apfeldlab/sensoroverlord)
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You can load sensor spectra information into an object, take ratio measurements from that spectra, convert those ratio measurements into biophysically-meaningful values (e.g. fraction protenated and pH or fraction oxidized and redox potential), and then analyze how errors in ratio measurements affect the errors in those values.

## Detailed Information

For more detailed information about this package, see our [manuscript in Scientific Reports](https://www.nature.com/articles/s41598-020-73987-0) and/or our [documentation site](https://apfeldlab.github.io/SensorOverlord/).

## Getting Started

You can install the package from within R with the `devtools` package.
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Expand Up @@ -5,11 +5,14 @@ <h3>Full SensorOverlord package</h3>
that you have seen in this application. For instructions on how to use and install
the SensorOverlord package, see the <a href="https://www.github.com/apfeldlab/sensoroverlord">associated
github package.</a></p>
<h3>Scientific Manuscript</h3>
<p>We have made available a much more rigorous and thorough overview of the SensorOverlord
package, as well as it's applications and derivations, in a manuscript <a href="https://www.biorxiv.org/content/10.1101/2020.01.31.928895v1">available here on biorxiv.</a></p>
<h3>Scientific Manuscript and Citation</h3>
<p>If you use SensorOverlord in your work, please cite our manuscript as follows:<p>
<p><span>Stanley, J.A., Johnsen, S.B. &amp; Apfeld, J. The SensorOverlord predicts the accuracy of measurements with ratiometric biosensors.&nbsp;</span><em>Sci Rep</em><span>&nbsp;</span><span>10,&nbsp;</span><span>16843 (2020). https://doi.org/10.1038/s41598-020-73987-0</span></p>
</p>
<p>The paper includes a much more rigorous overview of the SensorOverlord package, as well as its applications and derivations.
It is publically-available <a href="https://www.nature.com/articles/s41598-020-73987-0">here via Scentific Reports.</a></p>
<h3>Contact</h3>
<p>If you have absolutely any questions related to SensorOverlord, or just want to get in touch,
please feel free to reach out to me (Julian) at julianst [at] mit [dot] edu, or to my PI (Dr. Javier Apfeld)
at j [dot] apfeld [at] northeastern [dot] edu.</p>
<p>Best of luck with all of your microscopy endeavors!</p>
<p>Best of luck with all of your microscopy endeavors!</p>

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