removed save intermediate alignment files from rnaseq template

BU-ISCIII · May 31, 2024 · 5369862 · 5369862
1 parent 65e15ee
commit 5369862
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/bu_isciii/templates/rnaseq/ANALYSIS/DATE_ANALYSIS01_RNASEQ/lablog b/bu_isciii/templates/rnaseq/ANALYSIS/DATE_ANALYSIS01_RNASEQ/lablog
@@ -24,7 +24,6 @@ export NXF_OPTS="-Xms500M -Xmx4G"
           -params-file ../../DOC/hg38_ensmbl_rnaseq.yml \\
           --input samplesheet.csv \\
           --outdir 01-$(date '+%Y%m%d')_rnaseq \\
-          --save_align_intermeds \\
           --skip_markduplicates \\
           --pseudo_aligner salmon \\
           -resume