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Merge changes from main into develop#194

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saramonzon merged 52 commits intodevelopBU-ISCIII/buisciii-tools:developfrom mainBU-ISCIII/buisciii-tools:mainCopy head branch name to clipboardFeb 1, 2024

+768-117

Commits

Commits on Jan 8, 2024

• Merge pull request #176 from BU-ISCIII/develop

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  svarona

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• created nf-config for nfcore-bacass

  Daniel-VM

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Commits on Jan 12, 2024

• added nfbacass lablogs and updated config

  Daniel-VM

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Commits on Jan 15, 2024

• Adding line for renaming ANALYSIS0X_MAG dir in lablog_viralrecon

  

  jaimeozaez

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  svarona

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• add results lablog

  Daniel-VM

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Commits on Jan 16, 2024

• Added changelog

  

  svarona

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  saramonzon

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• Added template for pull request

  

  svarona

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  saramonzon

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• Added templates to changelog

  

  svarona

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  saramonzon

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• added contributors

  

  svarona

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  saramonzon

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• removed unnecessary line

  Shettland

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• commented PASS_ONLY line parameter

  Shettland

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• small changes in viralrecon_results script

  Shettland

  committed
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• introduced better error handling in excel_generator, now it can also be used for single files

  Shettland

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• symbolic link for flu-C

  Shettland

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• introduced handling of flu-C in 04-irma lablog

  Shettland

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• introduced handling of flu-C in create_irma_stats.sh

  Shettland

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• New implementations in excel_generator.py

  Shettland

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• Changed blast symlink in viralrecon_results

  Shettland

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• Implementations in excel_generator.py and error handling

  Shettland

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• No more blast folder in viralrecon_results

  Shettland

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Commits on Jan 18, 2024

• added contributing guidelines file

  saramonzon

  committed
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• added github action to automatically create prs to sync branches

  saramonzon

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• typo and aclaration on contributing.md

  saramonzon

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• changelog modification clarified, minor style changes

  saramonzon

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  91a78cb

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• updated changelog

  saramonzon

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  46565fe

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• updated pull request template path and text

  saramonzon

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  e32b075

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• added more dots

  saramonzon

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Commits on Jan 19, 2024

• update wf local name and fix reference files output

  Daniel-VM

  committed
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• CHANGELOG.md updated with jaimeozaez changes

  

  jaimeozaez

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  saramonzon

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• CHANGELOG.md updated with jaimeozaez changes

  

  jaimeozaez

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  saramonzon

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• Information relocation and clarification in CHANGELOG.md

  

  jaimeozaez

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  saramonzon

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  462e349

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• Format fix

  

  jaimeozaez

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  saramonzon

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  22d1921

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• Format fix

  

  jaimeozaez

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  saramonzon

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• Format fix

  

  jaimeozaez

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  saramonzon

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  8b4652f

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• add remaining folders and update servicejson

  Daniel-VM

  committed
  e2f248f

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• clean todos and fix report filename

  Daniel-VM

  committed
  622d4fa

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• replace the old assembly template with the new one

  Daniel-VM

  committed
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• Merge branch 'template-nfcore-bacass' into hotfix

  Daniel-VM

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• update changelog

  Daniel-VM

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Commits on Jan 22, 2024

• Updated CHANGELOG.md with last PR

  

  Shettland

  authored and

  saramonzon

  committed
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Commits on Jan 24, 2024

• added reviewer changes in #187

  Daniel-VM

  committed
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• Resolve conflicts in #187

  Daniel-VM

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Commits on Jan 30, 2024

• Small changes in variables names for clarification

  Shettland

  committed
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• Fixed small typo in regex from last PR

  Shettland

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• Updated linting

  Shettland

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Commits on Jan 31, 2024

• Merge branch 'hotfix' into hotfix

  saramonzon

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• Merge pull request #187 from Daniel-VM/hotfix

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  saramonzon

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Commits on Feb 1, 2024

• updated changelog and bumped new version

  saramonzon

  committed
  43d2ac5

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• minor changes in excel_generator.py

  

  Shettland

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  saramonzon

  committed
  0e2c9af

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• minor changes in excel_generator.py, linting

  

  Shettland

  authored and

  saramonzon

  committed
  9fc507f

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• Updated CHANGELOG.md

  

  Shettland

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  saramonzon

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  d38036e

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• Merge pull request #193 from BU-ISCIII/hotfix

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  saramonzon

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