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Merge changes from main into hotfix#360

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victor5lm merged 19 commits intohotfixBU-ISCIII/buisciii-tools:hotfixfrom mainBU-ISCIII/buisciii-tools:mainCopy head branch name to clipboardOct 29, 2024

+149-17

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Commits on Oct 1, 2024

• Merge changes from main into hotfix (#195) (#346)

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Commits on Oct 15, 2024

• Included actions to publish release to pypi

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• Updated CHANGELOG

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• Updated new pip instructions

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Commits on Oct 29, 2024

• Updated the fix-permissions module in __main__.py

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• Updated taxprofiler.config

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• Updated sftp_user.json

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• Fixed viralrecon's lablog and remove_columns script

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• Updated mtbseq templates

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• Updated bioinfo_doc.py to handle the Unable to send e-mail error message

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• Updated new_service.py to check FASTQ integrity

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• Updated CHANGELOG.md, setup.py and __main__.py

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• Fixed some linting mistakes in new_service.py

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• Ran black on new_service.py

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• Removed an extra comma from sftp_user.json

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• Removed conda env line from viralrecon's results lablog

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• Substituted /srv/fastq_repo by its variable name

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• Ran black on new_service.py

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• Merge pull request #358 from BU-ISCIII/develop

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