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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-f278c18e
+2eb1afca
diff --git a/01_reconstruction_methods.html b/01_reconstruction_methods.html
@@ -8,7 +8,7 @@
 
 <meta name="author" content="Tanya Strydom">
 <meta name="author" content="Friends">
-<meta name="dcterms.date" content="2024-06-24">
+<meta name="dcterms.date" content="2024-06-25">
 
 <title>How we reconstruct paleo food webs – Paleo-linked methods for network reconstruction</title>
 <style>
@@ -22,7 +22,27 @@
 width: 0.8em;
 margin: 0 0.8em 0.2em -1em;  vertical-align: middle;
 }
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+
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@@ -4753,7 +4773,7 @@ <h1 class="title">How we reconstruct paleo food webs</h1>
       <div>
       <div class="quarto-title-meta-heading">Published</div>
       <div class="quarto-title-meta-contents">
-        <p class="date">June 24, 2024</p>
+        <p class="date">June 25, 2024</p>
       </div>
     </div>
 
@@ -4883,17 +4903,45 @@ <h1 class="title">How we reconstruct paleo food webs</h1>
 
 <section id="why-build-paleo-food-webs" class="level2">
 <h2 class="anchored" data-anchor-id="why-build-paleo-food-webs">Why build paleo food webs?</h2>
-</section>
-<section id="what-do-they-mean" class="level2">
-<h2 class="anchored" data-anchor-id="what-do-they-mean">What do they mean?</h2>
+<ul>
+<li><p>Becuase its interesting?</p></li>
+<li><p>Value in using hindcasting to aid in forecasting. <em>e.g.,</em> the Toarcian ms shows how we can use these pelao communities to understand trophic-level responses to extinctions.</p></li>
+</ul>
 </section>
 <section id="how-do-we-do-it" class="level2">
 <h2 class="anchored" data-anchor-id="how-do-we-do-it">How do we do it?</h2>
+<ul>
+<li><p>There is an evolving body of work that focuses on developing tools specifically for the task of predicting food webs.</p></li>
+<li><p>There are a handful that have been developed specifically in the context of paleo settings <em>e.g.,</em> TODO</p></li>
+<li><p>Different underlying theory though</p></li>
+</ul>
+</section>
+<section id="understanding-how-networks-are-different" class="level2">
+<h2 class="anchored" data-anchor-id="understanding-how-networks-are-different">Understanding how networks are different</h2>
+<ul>
+<li><p>Not always representing the same things (<em>i.e.,</em> different underlying philosophies). So, although they may all be representing food webs (and feeding links between species) they are ‘telling different stories’</p></li>
+<li><p>Need to be careful when we are ‘presenting’/analysing these different food webs and we can’t really compare on contrast</p></li>
+<li><p><em>e.g.,</em> <span class="citation" data-cites="brimacombe2023">Brimacombe et al. (<a href="#ref-brimacombe2023" role="doc-biblioref">2023</a>)</span> shows that the research group influences the ‘criteria’ that defines interactions/networks and so we can’t actually meaningfully integrate these networks into the same database and assume that they ‘fit’ together.</p></li>
+<li><p>Petchy dilemma?</p></li>
+</ul>
+</section>
+<section id="section-overview" class="level2">
+<h2 class="anchored" data-anchor-id="section-overview">Section Overview</h2>
+<ul>
+<li><p>introduce/discuss some of the paleo food web reconstruction methods</p></li>
+<li><p>construct networks for (ideally) a datasets across distinct time units using these (or some of) approaches</p></li>
+<li><p>compare and contrast if they tell us a different story</p></li>
+</ul>
+
 
 
 </section>
 
-</main> <!-- /main -->
+<div id="quarto-appendix" class="default"><section class="quarto-appendix-contents" role="doc-bibliography" id="quarto-bibliography"><h2 class="anchored quarto-appendix-heading">References</h2><div id="refs" class="references csl-bib-body hanging-indent" data-entry-spacing="0" role="list">
+<div id="ref-brimacombe2023" class="csl-entry" role="listitem">
+Brimacombe, Chris, Korryn Bodner, Matthew Michalska-Smith, Timothée Poisot, and Marie-Josée Fortin. 2023. <span>“Shortcomings of Reusing Species Interaction Networks Created by Different Sets of Researchers.”</span> Edited by Pedro Jordano. <em>PLOS Biology</em> 21 (4): e3002068. <a href="https://doi.org/10.1371/journal.pbio.3002068">https://doi.org/10.1371/journal.pbio.3002068</a>.
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diff --git a/02_bodymass_ratio.html b/02_bodymass_ratio.html
diff --git a/03_expert_knowledge.html b/03_expert_knowledge.html
diff --git a/04_PFIM.html b/04_PFIM.html
diff --git a/05_contemporary.html b/05_contemporary.html
@@ -8,7 +8,7 @@
 
 <meta name="author" content="Tanya Strydom">
 <meta name="author" content="Friends">
-<meta name="dcterms.date" content="2024-06-24">
+<meta name="dcterms.date" content="2024-06-25">
 
 <title>Using contemporary proxies – Paleo-linked methods for network reconstruction</title>
 <style>
@@ -4773,7 +4773,7 @@ <h1 class="title">Using contemporary proxies</h1>
       <div>
       <div class="quarto-title-meta-heading">Published</div>
       <div class="quarto-title-meta-contents">
-        <p class="date">June 24, 2024</p>
+        <p class="date">June 25, 2024</p>
       </div>
     </div>
 

diff --git a/06_meta_vs_realised.html b/06_meta_vs_realised.html
diff --git a/07_structure_vs_form.html b/07_structure_vs_form.html
@@ -8,7 +8,7 @@
 
 <meta name="author" content="Tanya Strydom">
 <meta name="author" content="Friends">
-<meta name="dcterms.date" content="2024-06-24">
+<meta name="dcterms.date" content="2024-06-25">
 
 <title>Structure vs Function – Paleo-linked methods for network reconstruction</title>
 <style>
@@ -4752,7 +4752,7 @@ <h1 class="title">Structure vs Function</h1>
       <div>
       <div class="quarto-title-meta-heading">Published</div>
       <div class="quarto-title-meta-contents">
-        <p class="date">June 24, 2024</p>
+        <p class="date">June 25, 2024</p>
       </div>
     </div>
 
@@ -4881,8 +4881,15 @@ <h1 class="title">Structure vs Function</h1>
 
 
 <p>Linking structure and function to ecological processes</p>
+<section id="section-overview" class="level2">
+<h2 class="anchored" data-anchor-id="section-overview">Section Overview</h2>
+<ul>
+<li><p>We can use the networks that we built from the previous section and showcase how they (maybe) are giving way different metrics (telling different stories)</p></li>
+<li><p>I think if we have multiple networks for different time points as well we can compare within and between network differences? (need to have a think on that)</p></li>
+</ul>
 
 
+</section>
 
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+    "text": "Section Overview\n\nWe can use the networks that we built from the previous section and showcase how they (maybe) are giving way different metrics (telling different stories)\nI think if we have multiple networks for different time points as well we can compare within and between network differences? (need to have a think on that)",
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+    "text": "How do we do it?\n\nThere is an evolving body of work that focuses on developing tools specifically for the task of predicting food webs.\nThere are a handful that have been developed specifically in the context of paleo settings e.g., TODO\nDifferent underlying theory though",
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+    "text": "Understanding how networks are different\n\nNot always representing the same things (i.e., different underlying philosophies). So, although they may all be representing food webs (and feeding links between species) they are ‘telling different stories’\nNeed to be careful when we are ‘presenting’/analysing these different food webs and we can’t really compare on contrast\ne.g., Brimacombe et al. (2023) shows that the research group influences the ‘criteria’ that defines interactions/networks and so we can’t actually meaningfully integrate these networks into the same database and assume that they ‘fit’ together.\nPetchy dilemma?",
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+    "text": "Both expert knowledge but also as derived from fossil observations? e.g., gut content as well as signs of predation/feeding. Dunne et al. (2008) is probably the quintessential paleo example but there are others…",
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+    "text": "References\n\n\nDunne, Jennifer A, Richard J Williams, Neo D Martinez, Rachel A Wood, and Douglas H Erwin. 2008. “Compilation and Network Analyses of Cambrian Food Webs.” Edited by Andrew P Dobson. PLoS Biology 6 (4): e102. https://doi.org/10.1371/journal.pbio.0060102.",
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