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DOC Mention supported Python versions
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luispedro committed Jun 17, 2020
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29 changes: 15 additions & 14 deletions README.md
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Expand Up @@ -7,25 +7,16 @@ Command line tool to query the Global Microbial Gene Catalog (GMGC).

## Install

Install from source
GMGC-mapper runs on Python 3.6-3.8 and requires
[prodigal](https://github.com/hyattpd/Prodigal) to be available for genome
mode.

### Install from source

```bash
python setup.py install
```

GMGC-mapper requires [prodigal](https://github.com/hyattpd/Prodigal) to be
available for genome mode.


## Parameters

* `-i/--input`: path to the input genome file(.fasta/.gz/.bz2).

* `-o/--output`: Output directory (will be created if non-existent).

* `--nt-genes`: path to the input DNA gene file(.fasta/.gz/.bz2).

* `--aa-genes`: path to the input Protein gene file(.fasta/.gz/.bz2).

## Examples

Expand Down Expand Up @@ -66,3 +57,13 @@ For more details, [read the
docs](https://gmgc-mapper.readthedocs.io/en/latest/output/). A description of
the outputs is also written to output folder for convenience.

## Parameters

* `-i/--input`: path to the input genome file(.fasta/.gz/.bz2).

* `-o/--output`: Output directory (will be created if non-existent).

* `--nt-genes`: path to the input DNA gene file(.fasta/.gz/.bz2).

* `--aa-genes`: path to the input Protein gene file(.fasta/.gz/.bz2).

7 changes: 4 additions & 3 deletions docs/install.md
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@@ -1,9 +1,10 @@
# Install

GMGC-mapper requires [prodigal](https://github.com/hyattpd/Prodigal). You need
to install prodigal first and add it into your system path.
GMGC-mapper runs on Python 3.6-3.8 and requires
[prodigal](https://github.com/hyattpd/Prodigal). You need to install prodigal
first and add it into your system path.

Install from source
### Installing from source

```bash
python setup.py install
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