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<li class="toctree-l1"><a class="reference internal" href="/basic_linux/">Basic Linux</a>
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<p class="caption"><span class="caption-text">Bulk RNA-seq</span></p>
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<li class="toctree-l1"><a class="reference internal" href="/bulkRNAseq_lab/">Read QC and alignment</a>
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<li class="toctree-l1"><a class="reference internal" href="/Phred_FQ/">Phred score in FASTQ</a>
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<li class="toctree-l1"><a class="reference internal" href="/BIOI611_introR/">Minimal R Introduction</a>
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<li class="toctree-l1"><a class="reference internal" href="/BIOI611_DESeq2_analysis/">DEG analysis using DESeq2</a>
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<li class="toctree-l1"><a class="reference internal" href="/BIOI611_ballgown_example/">DE analysis at isoform-leve using ballgown (example data)</a>
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<li class="toctree-l1"><a class="reference internal" href="/BIOI611_bulkRNA_SE_ballgown/">DE analysis at isoform-leve using ballgown (C. ele data)</a>
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<p class="caption"><span class="caption-text">scRNA-seq</span></p>
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<li class="toctree-l1"><a class="reference internal" href="/BIOI611_analysis_10x_dataset_PBMC/">Initial analysis of 10x scRNA-seq data for human PBMC using cellranger</a>
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<li class="toctree-l1"><a class="reference internal" href="/BIOI611_scRNA/">Downstream analysis of 10x scRNA-seq data for human PBMC using Seurat</a>
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<li class="toctree-l1"><a class="reference internal" href="/BIOI611_scRNA_seq_cele_cellranger/">Initial analysis of 10x scRNA-seq data for C. elegans using cellranger</a>
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<li class="toctree-l1"><a class="reference internal" href="/BIOI611_scRNA_cele/">Downstream analysis of 10x scRNA-seq data for C. elegans data</a>
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