Skip to content

Commit

Permalink
stable local version
Browse files Browse the repository at this point in the history
  • Loading branch information
frapercan committed Jan 13, 2025
1 parent ca77f5c commit 2c0a76d
Show file tree
Hide file tree
Showing 2 changed files with 9 additions and 8 deletions.
15 changes: 8 additions & 7 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,4 +1,11 @@
# **FANTASIA Comprehensive Guide**
# **FANTASIA**
![FANTASIA Logo](docs/source/_static/FANTASIA.png)

## **Introduction**

FANTASIA (Functional ANnoTAtion based on embedding space SImilArity) is a pipeline for annotating Gene Ontology (GO) terms for protein sequences using advanced protein language models like **ProtT5**, **ProstT5**, and **ESM2**. This system automates complex workflows, from sequence processing to functional annotation, providing a scalable and efficient solution for protein structure and functionality analysis.

---

## **Table of Contents**

Expand All @@ -17,12 +24,6 @@

---

## **Introduction**

FANTASIA (Functional ANnoTAtion based on embedding space SImilArity) is a pipeline for annotating Gene Ontology (GO) terms for protein sequences using advanced protein language models like **ProtT5**, **ProstT5**, and **ESM2**. This system automates complex workflows, from sequence processing to functional annotation, providing a scalable and efficient solution for protein structure and functionality analysis.

---

## **Key Features**

- **Redundancy Filtering**: Removes identical sequences with **CD-HIT** and optionally excludes sequences based on length constraints.
Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
[tool.poetry]
name = "FANTASIA"
version = "0.2.0"
version = "0.3.0"
description = "Functional ANnoTAtion based on embedding space SImilArity"
authors = ["Francisco Miguel Pérez Canales <[email protected]>","Gemma Martínez Redondo <[email protected]>"]
readme = "README.md"
Expand Down

0 comments on commit 2c0a76d

Please sign in to comment.