adding mmul to config

config/config.yaml

@@ -29,6 +29,7 @@ samplemanifest: "WORKDIR/samples.tsv"
 # genome: "hg38"
 # genome: "hg19"
 genome: "mm10"
+# genome: "mmul"
 
 
 # setting below this line should be changed carefully... defaults are set after considerable optimizations.
@@ -75,6 +76,16 @@ mm10:
     promoterbed: "PIPELINE_HOME/resources/frip/mm10.promoters.bed.gz"
     enhancerbed: "PIPELINE_HOME/resources/frip/mm10.enhancers.bed.gz"
 
+mmul:
+  indexdir: "/data/CCBR_Pipeliner/db/PipeDB/Indices/mmul_10/indexes"
+  blacklistFa: "PIPELINE_HOME/resources/blacklistFa/mmul.blacklist.fa.gz"
+  tssBed: "PIPELINE_HOME/resources/tssBed/mmul_tssbeds.tar.gz"
+  homermotif: "PIPELINE_HOME/resources/motif/HOCOMOCOv11_full_HUMAN_MOUSE_mono_homer_format_0.001.motif"
+  mememotif: "PIPELINE_HOME/resources/motif/HOCOMOCOv11_core_HUMAN_MOUSE_mono_meme_format.tar.gz"
+  effectiveGenomeSize: 2000000000
+  fripextra:
+    promoterbed: "PIPELINE_HOME/resources/frip/mmul.promoters.bed.gz"
+
 # MACS2 arguments/parameters for peak calling
 # annotatePeaks: True ensures annotation of called peaks using ChIPSeeker
 # set annotatePeaks: False if genome cannot be annotated with ChIPSeeker
@@ -83,7 +94,7 @@ macs2:
   extsize: 200
   shiftsize: 100
   annotatePeaks: True
-
+l
 # Genrich peak calling parameters
 # CCBR parameters
 genrich: