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fix: only load singularity module for eddie
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kelly-sovacool committed Dec 27, 2024
1 parent 1d8670a commit 442b6cb
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions charlie
Original file line number Diff line number Diff line change
Expand Up @@ -626,8 +626,8 @@ function main(){
elif [ "$PLATFORM" == "eddie" ]; then
# TODO fill in other variables for eddie
CLUSTER_PROFILE="config/eddie"
MODULE_LOAD="module load python singularity"
# snakemake is already in Taka's path in his bashrc
MODULE_LOAD="module load singularity"
# python & snakemake are already in Taka's path in his bashrc
TEMP_DIR="/exports/eddie/scratch/$USER"
else
CLUSTER_PROFILE="config/unknown"
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