fix: downgrade numpy to 1.21.0 for DCC docker

see https://stackoverflow.com/a/74934626
CCBR · Oct 17, 2024 · 6c5af93 · 6c5af93
1 parent c82d42a
commit 6c5af93
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Showing 4 changed files with 4 additions and 3 deletions.
diff --git a/config/biowulf/config.yaml b/config/biowulf/config.yaml
@@ -121,7 +121,7 @@ containers:
   ciri: "docker://nciccbr/charlie_ciri2:v1"
   clear: "docker://nciccbr/ccbr_clear:2"
   cutadapt: "docker://nciccbr/charlie_cutadapt_fqfilter:v1"
-  dcc: "docker://nciccbr/charlie_dcc:v0.2.0"
+  dcc: "docker://nciccbr/charlie_dcc:v0.2.1"
   fastqc: "docker://nciccbr/ccrgb_qctools:v4.0"
   mapsplice: "docker://cgrlab/mapsplice2:latest"
   multiqc: "docker://nciccbr/ccbr_multiqc_1.15:v1"

diff --git a/config/fnlcr/config.yaml b/config/fnlcr/config.yaml
@@ -121,7 +121,7 @@ containers:
   ciri: "docker://nciccbr/charlie_ciri2:v1"
   clear: "docker://nciccbr/ccbr_clear:2"
   cutadapt: "docker://nciccbr/charlie_cutadapt_fqfilter:v1"
-  dcc: "docker://nciccbr/charlie_dcc:v0.2.0"
+  dcc: "docker://nciccbr/charlie_dcc:v0.2.1"
   fastqc: "docker://nciccbr/ccrgb_qctools:v4.0"
   mapsplice: "docker://cgrlab/mapsplice2:latest"
   multiqc: "docker://nciccbr/ccbr_multiqc_1.15:v1"

diff --git a/docker/dcc/Dockerfile b/docker/dcc/Dockerfile
@@ -14,6 +14,7 @@ WORKDIR /opt2
 RUN wget https://github.com/dieterich-lab/DCC/archive/${DCC_VERSION}.zip -O dcc.zip && \
     unzip dcc.zip && \
     cd DCC-${DCC_VERSION} && \
+    pip install numpy==1.21.0 && \
     python setup.py install
 RUN which DCC && DCC -h
 

diff --git a/docker/dcc/meta.yml b/docker/dcc/meta.yml
@@ -1,4 +1,4 @@
 dockerhub_namespace: nciccbr
 image_name: charlie_dcc
-version: v0.2.0
+version: v0.2.1
 container: "$(dockerhub_namespace)/$(image_name):$(version)"