refactor: use profiles for slurm config #135
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Changes
Use snakemake's
--profileoption with cluster-specific config files to control cluster arguments, rather than hard coding them in the run script. This will allow us to more easily support other batch schedulers e.g. altair gridengine.Issues
towards #134 (doesn't resolve it)
PR Checklist
(
Strikethroughany points that are not applicable.)[ ] Update docs if there are any API changes.[ ] UpdateCHANGELOG.mdwith a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/