Add SVCallers: gridss and CNV: cnvkit,ascat #65
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Changes
Add SVCallers: gridss and CNV: cnvkit,ascat and SNV: deepsomatic
Additional bug fixes for strelka, varscan including for combining all somatic variants
Adds references for hg19/mm10
New callers specified using
--svcallers ascatand--cnvcallers cnvkitIssues
PR Checklist
(
Strikethroughany points that are not applicable.)[ ] Write unit tests for any new features, bug fixes, or other code changes.testing framework not yet implementedcontainerandstub.CHANGELOG.mdwith a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/