docs: add normalize_counts() example to intro

CCBR · Jan 8, 2025 · 68dd20e · 68dd20e
1 parent 1f8eec6
commit 68dd20e
Showing 1 changed file with 8 additions and 1 deletion.
diff --git a/vignettes/intro.Rmd b/vignettes/intro.Rmd
@@ -49,7 +49,14 @@ moo <- moo %>%
     minimum_count_value_to_be_considered_nonzero = 1,
     minimum_number_of_samples_with_nonzero_counts_in_total = 1,
     minimum_number_of_samples_with_nonzero_counts_in_a_group = 1,
+  ) %>%
+  normalize_counts(
+    gene_names_column = "Ensembl_ID_version",
+    sample_names_column = "sample_id",
+    group_column = "condition",
+    label_column = "sample_id",
+    columns_to_include = c("Ensembl_ID_version", "KO_S3", "KO_S4", "WT_S1", "WT_S2")
   )
 
-moo@counts$filt %>% head()
+moo@counts$norm$voom %>% head()
 ```