[FIX] Compatibility of Arguments in C (#1564)

* feat: breaking all parameters

* fix: some parameters

* fix: many things

* fix: error

* fix: -h

* fix: more parameters

* fix: add dash to help commands

* fix: help for output-field

* fix: single dash

* fix: --out and --in

* fix: move notes to the end of help menu

* fix: final changes to notes

* fix: extra spacing

* fix: wrong formatting of parenthesis