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Issues list

Duplicated 'step 3' When exporting to cbioportal mutation mapper
#150 opened Dec 7, 2023 by selkamand
Use shinyvalidate to indicate required text values on input [Feature Request] enhancement New feature or request
#145 opened Nov 26, 2023 by selkamand
Ensure options(shiny.maxRequestSize=50*1024^2) automatically overwrites
#144 opened Nov 24, 2023 by selkamand
Time from enrolment treated as categorical
#143 opened Nov 23, 2023 by selkamand
3
Documentation: you shouldn't exclude dubious genes when exporting data to signal/mutalisk
#142 opened Nov 22, 2023 by selkamand
test shinyapps.crux IO timeout times
#141 opened Nov 22, 2023 by selkamand
Add download button for compare cohorts table
#140 opened Nov 22, 2023 by selkamand
Add gene name overlap plots + warnings when comparing / merging datasets
#139 opened Nov 22, 2023 by selkamand
Installation fails on M2 mac: Ropensci
#138 opened Nov 22, 2023 by selkamand
Mutational Signatures: Add warnings
#137 opened Nov 16, 2023 by selkamand
Subsetting should show missing values and allow you to explicitly subset for missing data
#131 opened Nov 15, 2023 by selkamand
Add support for mutaliskRutils custom palettes
#130 opened Nov 15, 2023 by selkamand
1-patient difference between brca subtype column numbers differ from subset you get via GUI based subsetting
#122 opened Nov 14, 2023 by selkamand
1
VCF2MAF support [Feature Request] enhancement New feature or request
#119 opened Nov 13, 2023 by selkamand
Add documentation for oncodriveCLUSTL [Feature Request] enhancement New feature or request
#113 opened Nov 13, 2023 by selkamand
Support import of multiple single sample MAF/ANNOVAR files [Feature Request] enhancement New feature or request
#105 opened Nov 10, 2023 by selkamand
Prepare offline app releases
#85 opened May 3, 2023 by selkamand
Remove shinyBS and substitute for bsplus
#70 opened Feb 6, 2023 by selkamand
Replace utilitybeltassertions and assertthat with selkamand/assertions
#69 opened Feb 6, 2023 by selkamand
1
Move maftools_cluster_samples to a maftools extending package and add as CRUX module
#68 opened Feb 6, 2023 by selkamand
Comprehensive test of CRUX offline version without an internet connection
#65 opened Feb 6, 2023 by selkamand
Different colours/formats for names, abbreviations and data_sources in drop-down
#56 opened Feb 3, 2023 by selkamand
1
Subsetting: Different types of criteria are combined with 'OR'. Make this clearer to user
#54 opened Feb 2, 2023 by selkamand
Subset module: Improve error messages when no dataset is selected
#53 opened Feb 2, 2023 by selkamand
Add cssloader to subset_maf elements that appear/disappear while we retrieve genes/samples/etc from MAF
#52 opened Feb 2, 2023 by selkamand
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