Add installation info

docs/index.md

@@ -1,3 +1,38 @@
+# scMaestro
 
 `scMaestro`, developed by CCRSF IFX, is aim to provide an end-to-end solution for single cell sequencing data. 
 
+## Quick start
+
+To run `scMastro`, activation of an conda environment `singularity` are required.
+
+* Clone git repo
+
+```
+git clone --recurse-submodules https://github.com/CCRSF-IFX/scMaestro.git
+cd scMaestro/
+```
+
+* Install conda environment: 
+
+```
+conda env create -n scMastro -f environment.yml
+```
+
+You only need to run the command above once. 
+
+* Activate conda environment 
+
+
+```
+conda activate scMastro
+```
+
+* Run `scMastro`
+
+```
+./scMastro
+```
+
+
+