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Merge pull request #165 from CSCfi/develop
bump to 0.8.0
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| <STUDY_SET> | ||
| <STUDY alias="GSE10966" center_name="GEO"> | ||
| <IDENTIFIERS> | ||
| <PRIMARY_ID>SRP000539</PRIMARY_ID> | ||
| <EXTERNAL_ID label="primary" namespace="BioProject">PRJNA108793</EXTERNAL_ID> | ||
| <EXTERNAL_ID namespace="GEO">GSE10966</EXTERNAL_ID> | ||
| </IDENTIFIERS> | ||
| <DESCRIPTOR> | ||
| <STUDY_TITLE>Different title for testing purposes | ||
| </STUDY_TITLE> | ||
| <STUDY_TYPE existing_study_type="Other" /> | ||
| <STUDY_ABSTRACT>Part of a set of highly integrated epigenome maps for Arabidopsis thaliana. Keywords: | ||
| Illumina high-throughput bisulfite sequencing Overall design: Whole genome shotgun bisulfite sequencing | ||
| of wildtype Arabidopsis plants (Columbia-0), and met1, drm1 drm2 cmt3, and ros1 dml2 dml3 null mutants | ||
| using the Illumina Genetic Analyzer. | ||
| </STUDY_ABSTRACT> | ||
| <CENTER_PROJECT_NAME>GSE10966</CENTER_PROJECT_NAME> | ||
| </DESCRIPTOR> | ||
| <STUDY_LINKS> | ||
| <STUDY_LINK> | ||
| <XREF_LINK> | ||
| <DB>pubmed</DB> | ||
| <ID>18423832</ID> | ||
| </XREF_LINK> | ||
| </STUDY_LINK> | ||
| </STUDY_LINKS> | ||
| <STUDY_ATTRIBUTES> | ||
| <STUDY_ATTRIBUTE> | ||
| <TAG>parent_bioproject</TAG> | ||
| <VALUE>PRJNA107265</VALUE> | ||
| </STUDY_ATTRIBUTE> | ||
| </STUDY_ATTRIBUTES> | ||
| </STUDY> | ||
| </STUDY_SET> |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,56 @@ | ||
| describe("empty form should not be alerted or saved", function () { | ||
| const baseUrl = "http://localhost:" + Cypress.env("port") + "/" | ||
|
|
||
| it("should not show draft saving alert when form is empty, should not save an empty form", () => { | ||
| cy.visit(baseUrl) | ||
| cy.get('[alt="CSC Login"]').click() | ||
| cy.visit(baseUrl + "newdraft") | ||
|
|
||
| // Navigate to folder creation | ||
| cy.get("button[type=button]").contains("New folder").click() | ||
|
|
||
| // Add folder name & description, navigate to submissions | ||
| cy.get("input[name='name']").type("Test name") | ||
| cy.get("textarea[name='description']").type("Test description") | ||
| cy.get("button[type=button]").contains("Next").click() | ||
|
|
||
| // Focus on the Study title input in the Study form (not type anything) | ||
| cy.get("div[role=button]").contains("Study").click() | ||
| cy.get("div[role=button]").contains("Fill Form").click() | ||
| cy.get("input[name='descriptor.studyTitle']").focus() | ||
|
|
||
| // Switch to "Upload XML File" and Alert window should not pop up | ||
| cy.get("div[role=button]").contains("Upload XML File").click() | ||
| cy.get("form", { timeout: 10000 }).should("be.visible") | ||
| cy.get("form").within(() => { | ||
| cy.get("input[placeholder='Name']").should("be.visible") | ||
| }) | ||
|
|
||
| // Switch back to "Fill form" and fill it | ||
| cy.get("div[role=button]").contains("Fill Form").click() | ||
| cy.get("input[name='descriptor.studyTitle']").type("Test study") | ||
| cy.get("input[name='descriptor.studyTitle']").should("have.value", "Test study") | ||
|
|
||
| // Clear form and Save | ||
| cy.get("button[type=button]").contains("Clear form").click() | ||
| cy.get("input[name='descriptor.studyTitle']", { timeout: 10000 }).should("be.empty") | ||
| cy.get("button[type=button]").contains("Save as Draft").click() | ||
|
|
||
| // Expect Info window should pop up | ||
| cy.get("div[role=alert]", { timeout: 10000 }).contains("An empty form cannot be saved.").should("be.visible") | ||
|
|
||
| // Fill in Form and Save | ||
| cy.get("input[name='descriptor.studyTitle']").type("Test study") | ||
| cy.get("input[name='descriptor.studyTitle']").should("have.value", "Test study") | ||
| cy.get("button[type=button]").contains("Save as Draft").click() | ||
|
|
||
| cy.get("div[role=alert]", { timeout: 10000 }).contains("Draft saved with") | ||
|
|
||
| // Clear Study title input and Save | ||
| cy.get("input[name='descriptor.studyTitle']").clear() | ||
| cy.get("button[type=button]").contains("Save as Draft").click() | ||
|
|
||
| // Expect Info window should pop up | ||
| cy.get("div[role=alert]", { timeout: 10000 }).contains("An empty form cannot be saved.").should("be.visible") | ||
| }) | ||
| }) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,171 @@ | ||
| describe("Home e2e", function () { | ||
| const baseUrl = "http://localhost:" + Cypress.env("port") + "/" | ||
|
|
||
| beforeEach(() => { | ||
| cy.visit(baseUrl) | ||
| cy.get('[alt="CSC Login"]').click() | ||
| }) | ||
|
|
||
| it("show Overview submissions in Home page, create a draft folder, navigate to see folder details, delete object inside folder, navigate back to Overview submissions", () => { | ||
| // Overview submissions should have 2 different list and max. 5 items each list | ||
| cy.contains("Your Draft Submissions", { timeout: 10000 }).should("be.visible") | ||
| cy.contains("Your Published Submissions").should("be.visible") | ||
|
|
||
| cy.get("ul.MuiList-root").eq(0).children().should("have.length.at.most", 5) | ||
| cy.get("ul.MuiList-root").eq(1).children().should("have.length.at.most", 5) | ||
|
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||
| // Create a new Unpublished folder | ||
| cy.get("button").contains("Create Submission").click() | ||
|
|
||
| // Navigate to folder creation | ||
| cy.get("button[type=button]").contains("New folder").click() | ||
|
|
||
| // Add folder name & description, navigate to editing folder | ||
| cy.get("input[name='name']").type("Test unpublished folder") | ||
| cy.get("textarea[name='description']").type("Test description") | ||
| cy.get("button[type=button]").contains("Next").click() | ||
|
|
||
| // Fill a Study form | ||
| cy.get("div[role=button]", { timeout: 10000 }).contains("Study").click() | ||
| cy.get("div[role=button]").contains("Fill Form").click() | ||
| cy.get("input[name='descriptor.studyTitle']").type("Test title") | ||
| cy.get("select[name='descriptor.studyType']").select("Resequencing") | ||
|
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||
| // Submit form | ||
| cy.get("button[type=submit]").contains("Submit").click() | ||
| cy.get(".MuiListItem-container", { timeout: 10000 }).should("have.length", 1) | ||
|
|
||
| // Navigate to summary | ||
| cy.get("button[type=button]").contains("Next").click() | ||
|
|
||
| // Check the amount of submitted objects in Study | ||
| cy.get("h6").contains("Study").parent("div").children().eq(1).should("have.text", 1) | ||
|
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||
| // Save folder and navigate to Home page | ||
| cy.get("button[type=button]").contains("Save and Exit").click() | ||
| cy.get('button[aria-label="Save a new folder and move to frontpage"]').contains("Return to homepage").click() | ||
|
|
||
| cy.reload() | ||
| // Click "See all" button to navigate to all unpublished folders list | ||
| cy.get("div.MuiCardActions-root", { timeout: 30000 }) | ||
| .first() | ||
| .should("be.visible") | ||
| .find("button") | ||
| .contains("See all") | ||
| .should("be.visible") | ||
| .then($btn => $btn.click()) | ||
|
|
||
| // Check the created folder existing in the list and navigate to see its details | ||
| cy.get("ul.MuiList-root", { timeout: 10000 }) | ||
| .should("be.visible") | ||
| .within(() => | ||
| cy | ||
| .get("div.MuiButtonBase-root") | ||
| .filter(':contains("Test unpublished folder")', { timeout: 30000 }) | ||
| .should("be.visible") | ||
| .then($el => $el.last().click()) | ||
| ) | ||
|
|
||
| // Check the selected folder has the correct amount of objects | ||
| cy.get("table", { timeout: 10000 }).should("be.visible") | ||
|
|
||
| cy.get("tbody").should("be.visible") | ||
| cy.get("tbody>tr").should("have.length", 1) | ||
|
|
||
| // Delete an object inside the folder | ||
| cy.get("button[aria-label='Delete this object']") | ||
| .should("be.visible") | ||
| .then($btn => $btn.click()) | ||
| cy.get("tbody>tr", { timeout: 10000 }).should("have.length", 0) | ||
|
|
||
| // Navigate back to unpublished folders list | ||
| cy.contains("Your draft submissions") | ||
| .should("be.visible") | ||
| .then($el => $el.click()) | ||
|
|
||
| // Close unpublished folders list | ||
| cy.get("div.MuiCardActions-root") | ||
| .contains("Close") | ||
| .should("be.visible") | ||
| .then($btn => $btn.click()) | ||
|
|
||
| // Check Overview submissions page is shown | ||
| cy.contains("Your Draft Submissions").should("be.visible") | ||
| cy.contains("Your Published Submissions").should("be.visible") | ||
| }) | ||
|
|
||
| it("create a published folder, navigate to see folder details, delete object inside folder, navigate back to Overview submissions", () => { | ||
| // Create a new Published folder | ||
| cy.get("button").contains("Create Submission").click() | ||
|
|
||
| // Navigate to folder creation | ||
| cy.get("button[type=button]").contains("New folder").click() | ||
|
|
||
| // Add folder name & description, navigate to editing folder | ||
| cy.get("input[name='name']").type("Test published folder") | ||
| cy.get("textarea[name='description']").type("Test description") | ||
| cy.get("button[type=button]").contains("Next").click() | ||
|
|
||
| // Fill a Study form | ||
| cy.get("div[role=button]").contains("Study").click() | ||
| cy.get("div[role=button]").contains("Fill Form").click() | ||
| cy.get("input[name='descriptor.studyTitle']").type("Test title") | ||
| cy.get("select[name='descriptor.studyType']").select("Resequencing") | ||
|
|
||
| // Submit form | ||
| cy.get("button[type=submit]").contains("Submit").click() | ||
| cy.get(".MuiListItem-container", { timeout: 10000 }).should("have.length", 1) | ||
|
|
||
| // Navigate to summary | ||
| cy.get("button[type=button]").contains("Next").click() | ||
|
|
||
| // Check the amount of submitted objects in Study | ||
| cy.get("h6").contains("Study").parent("div").children().eq(1).should("have.text", 1) | ||
|
|
||
| // Navigate to publish | ||
| cy.get("button[type=button]").contains("Publish").click() | ||
| cy.get('button[aria-label="Publish folder contents and move to frontpage"]').contains("Publish").click() | ||
|
|
||
| cy.get("div", { timeout: 10000 }).contains("Logged in as:") | ||
| // Click "See all" button to navigate to all published folders list | ||
| cy.get("div.MuiCardActions-root", { timeout: 30000 }) | ||
| .last() | ||
| .should("be.visible") | ||
| .find("button") | ||
| .contains("See all") | ||
| .should("be.visible") | ||
| .then($btn => $btn.click()) | ||
|
|
||
| // Check the created folder existing in the list and navigate to see its details | ||
| cy.get("ul.MuiList-root", { timeout: 10000 }) | ||
| .should("be.visible") | ||
| .within(() => | ||
| cy | ||
| .get("div.MuiButtonBase-root") | ||
| .filter(':contains("Test published folder")', { timeout: 30000 }) | ||
| .should("be.visible") | ||
| .then($el => $el.last().click()) | ||
| ) | ||
|
|
||
| // Check the selected folder has the correct amount of objects | ||
| cy.get("table", { timeout: 10000 }).should("be.visible") | ||
|
|
||
| cy.get("tbody").should("be.visible") | ||
| cy.get("tbody>tr").should("have.length", 1) | ||
|
|
||
| // Navigate back to published folders list | ||
| cy.contains("Your published submissions") | ||
| .should("be.visible") | ||
| .then($el => $el.click()) | ||
|
|
||
| // Close published folders list | ||
| cy.get("div.MuiCardActions-root") | ||
| .contains("Close") | ||
| .should("be.visible") | ||
| .then($btn => $btn.click()) | ||
|
|
||
| // Check Overview submissions page is shown | ||
| cy.contains("Your Draft Submissions").should("be.visible") | ||
| cy.contains("Your Published Submissions").should("be.visible") | ||
| }) | ||
| }) |
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