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67 Open 340 Closed
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Issues list

Is the contig assembly metagenomic approach suitable for microeco analysis?
#461 opened Feb 6, 2025 by kestlermai
1
Network cal_network_attr()
#459 opened Feb 5, 2025 by DpennaS
2
DESeq2 Visualization enhancement New feature or request
#458 opened Jan 30, 2025 by DpennaS
1
Extract multi rank taxonomic abundance documentation Improvements or additions to documentation
#457 opened Jan 24, 2025 by fconstancias
1
Regression with random forests plot predicted vs observed good first issue Good for newcomers
#456 opened Jan 22, 2025 by fconstancias
4
New alpha diversity analysis - Hill numbers enhancement New feature or request
#451 opened Jan 15, 2025 by DpennaS
4
8.8 PICRUSt2 documentation Improvements or additions to documentation
#449 opened Jan 6, 2025 by jimena18-O
1
14.7 Mantel test + Correlation heatmap documentation Improvements or additions to documentation
#447 opened Dec 30, 2024 by jimena18-O
1
data transformation documentation Improvements or additions to documentation
#446 opened Dec 28, 2024 by StanleyDeng27
4
How to use microeco to calculate humann results documentation Improvements or additions to documentation
#445 opened Dec 27, 2024 by makerer5
1
在lefse分析时不显示分类单元名，但是图例中显示名称 documentation Improvements or additions to documentation
#444 opened Dec 22, 2024 by DuXinChina
6
Problem with phylo tree in microtable creation documentation Improvements or additions to documentation
#436 opened Nov 19, 2024 by martina-nasuelli
6
Group comparisons with paired samples documentation Improvements or additions to documentation good first issue Good for newcomers
#431 opened Nov 12, 2024 by motroy
6
Plotting actual read counts in Microeco-Class object using original OTU data documentation Improvements or additions to documentation good first issue Good for newcomers
#429 opened Oct 29, 2024 by JayalalKJ
1
Help needed: Removing cross-contaminated genera from microtable-class Object documentation Improvements or additions to documentation
#428 opened Oct 29, 2024 by JayalalKJ
1
Error in [.data.frame(rres, , rownames(abund_table_sub_lda), drop = FALSE)
#423 opened Oct 8, 2024 by shuchong200
2
doubts about taxonomy heatmap good first issue Good for newcomers
#413 opened Sep 25, 2024 by jamorillo
2
trans_diff$new with method "DESeq2" causes error. documentation Improvements or additions to documentation enhancement New feature or request good first issue Good for newcomers
#412 opened Sep 24, 2024 by 145218415
5
lefse analysis questions and plotting without tags
#411 opened Sep 14, 2024 by Roctry
3
How can I do venn/β-diversity analysis at higher taxonomic level documentation Improvements or additions to documentation
#403 opened Aug 28, 2024 by jieyin2023
1
Mantel test and Pearson's correlation documentation Improvements or additions to documentation
#393 opened Aug 7, 2024 by johagcoria
1
NA in Relative abundance graph documentation Improvements or additions to documentation
#389 opened Jul 22, 2024 by AnnaMarizzi
3
The plot generated by the 'plot_diff_cladogram' function appears unusual and difficult to interpret. documentation Improvements or additions to documentation good first issue Good for newcomers
#385 opened Jul 18, 2024 by lzuChengweiZhang
3
Query Regarding Paired Sample Analysis with trans_diff Function documentation Improvements or additions to documentation
#379 opened Jul 1, 2024 by learn-lx-zhu
5
Plotting Relative Abundance Graph with 3 Factors
#376 opened Jun 20, 2024 by amandamanully
1
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