MAINT: update lock files (#26)

* DX: remove `files.watcherExclude` * DX: set `PYTHONHASHSEED=0` * MAINT: ignore `LOG015` in TR-002 * MAINT: implement dev environment updates * MAINT: pin link to `numpy.emath` * MAINT: remove `enable-cache` argument (defaults to true) * MAINT: rename `TCH` Ruff rules to `TC` * MAINT: sort cSpell config * MAINT: update link to Lecture 17 * MAINT: update link to `ScipyTrustConstrV1` * MAINT: update to `astral-sh/setup-uv@v5` --------- Co-authored-by: GitHub <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
ComPWA · Dec 20, 2024 · d9e9634 · d9e9634
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diff --git a/.binder/postBuild b/.binder/postBuild
@@ -7,7 +7,6 @@ pixi_packages="$(NO_COLOR= pixi list --explicit --no-install | awk 'NR > 1 {prin
 if [[ -n "$pixi_packages" ]]; then
   pixi global install $pixi_packages
 fi
-export PYTHONHASHSEED="0"
 pixi clean cache --yes
 
 uv export \

diff --git a/.cspell.json b/.cspell.json
@@ -1,5 +1,4 @@
 {
-  "version": "0.2",
   "allowCompoundWords": false,
   "enableFiletypes": [
     "git-commit",
@@ -37,80 +36,10 @@
     "docs/conf.py",
     "pyproject.toml"
   ],
-  "language": "en-US",
-  "overrides": [
-    {
-      "allowCompoundWords": true,
-      "filename": "**/*.jl",
-      "languageId": "julia"
-    }
-  ],
-  "words": [
-    "AmpForm",
-    "analyticity",
-    "arccos",
-    "arctan",
-    "Argand",
-    "autograd",
-    "Blatt",
-    "Breit",
-    "Byckling",
-    "Colab",
-    "ComPWA",
-    "Dalitz",
-    "dummifies",
-    "dummify",
-    "eigenstates",
-    "Flatté",
-    "functools",
-    "GlueX",
-    "graphviz",
-    "Hankel",
-    "helicities",
-    "helicity",
-    "hepstats",
-    "Hippel",
-    "iminuit",
-    "IPython",
-    "JHEP",
-    "JPAC",
-    "Ketzer",
-    "Källén",
-    "lambdification",
-    "lambdified",
-    "lambdifies",
-    "lambdify",
-    "lambdifying",
-    "LHCb",
-    "lineshape",
-    "lineshapes",
-    "matplotlib",
-    "Mikhasenko",
-    "NumPy",
-    "parametrizations",
-    "Pixi",
-    "plotly",
-    "pyplot",
-    "QRules",
-    "Quigg",
-    "SciPy",
-    "sympify",
-    "SymPy",
-    "TensorWaves",
-    "traceback",
-    "unevaluatable",
-    "unitarity",
-    "unitless",
-    "unphysical",
-    "vectorize",
-    "Weisskopf",
-    "zfit"
-  ],
   "ignoreWords": [
     "Kutschke",
     "Marangotto",
     "PINF",
-    "PYTHONHASHSEED",
     "Richman",
     "absl",
     "aitchison",
@@ -310,5 +239,76 @@
     "zlim",
     "zorder",
     "zticks"
+  ],
+  "language": "en-US",
+  "overrides": [
+    {
+      "allowCompoundWords": true,
+      "filename": "**/*.jl",
+      "languageId": "julia"
+    }
+  ],
+  "useGitignore": true,
+  "version": "0.2",
+  "words": [
+    "AmpForm",
+    "analyticity",
+    "arccos",
+    "arctan",
+    "Argand",
+    "autograd",
+    "Blatt",
+    "Breit",
+    "Byckling",
+    "Colab",
+    "ComPWA",
+    "Dalitz",
+    "dummifies",
+    "dummify",
+    "eigenstates",
+    "Flatté",
+    "functools",
+    "GlueX",
+    "graphviz",
+    "Hankel",
+    "helicities",
+    "helicity",
+    "hepstats",
+    "Hippel",
+    "iminuit",
+    "IPython",
+    "JHEP",
+    "JPAC",
+    "Ketzer",
+    "Källén",
+    "lambdification",
+    "lambdified",
+    "lambdifies",
+    "lambdify",
+    "lambdifying",
+    "LHCb",
+    "lineshape",
+    "lineshapes",
+    "matplotlib",
+    "Mikhasenko",
+    "NumPy",
+    "parametrizations",
+    "Pixi",
+    "plotly",
+    "pyplot",
+    "QRules",
+    "Quigg",
+    "SciPy",
+    "sympify",
+    "SymPy",
+    "TensorWaves",
+    "traceback",
+    "unevaluatable",
+    "unitarity",
+    "unitless",
+    "unphysical",
+    "vectorize",
+    "Weisskopf",
+    "zfit"
   ]
 }
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -5,9 +5,6 @@ concurrency:
   cancel-in-progress: |-
     ${{ github.ref != format('refs/heads/{0}', github.event.repository.default_branch) }}
 
-env:
-  PYTHONHASHSEED: "0"
-
 on:
   push:
     branches:

diff --git a/.github/workflows/notebooks.yml b/.github/workflows/notebooks.yml
@@ -17,9 +17,7 @@ jobs:
       - uses: actions/setup-python@v5
         with:
           python-version: "3.12"
-      - uses: astral-sh/setup-uv@v3
-        with:
-          enable-cache: true
+      - uses: astral-sh/setup-uv@v5
       - name: Install graphviz
         run: sudo apt-get -y install graphviz
       - name: Run all notebooks

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -12,7 +12,7 @@ repos:
       - id: check-useless-excludes
 
   - repo: https://github.com/ComPWA/policy
-    rev: 0.5.5
+    rev: 0.5.8
     hooks:
       - id: check-dev-files
         args:
@@ -28,7 +28,7 @@ repos:
       - id: remove-empty-tags
 
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.7.1
+    rev: 0.8.1
     hooks:
       - id: nbstripout
         args:
@@ -56,7 +56,7 @@ repos:
             metadata.vscode
 
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.8.7
+    rev: 1.9.1
     hooks:
       - id: nbqa-isort
         args: [--float-to-top]
@@ -75,7 +75,7 @@ repos:
           )$
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.7.1
+    rev: v0.8.4
     hooks:
       - id: ruff
         args: [--fix]
@@ -104,7 +104,7 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/ComPWA/prettier-pre-commit
-    rev: v3.3.3
+    rev: v3.4.2
     hooks:
       - id: prettier
 
@@ -114,14 +114,14 @@ repos:
       - id: taplo-format
 
   - repo: https://github.com/pappasam/toml-sort
-    rev: v0.23.1
+    rev: v0.24.2
     hooks:
       - id: toml-sort
         args: [--in-place]
         exclude: (?x)^(.*/Manifest\.toml|.*/Project\.toml)$
 
   - repo: https://github.com/streetsidesoftware/cspell-cli
-    rev: v8.15.2
+    rev: v8.17.0
     hooks:
       - id: cspell
 
@@ -147,11 +147,11 @@ repos:
           )$
 
   - repo: https://github.com/ComPWA/pyright-pre-commit
-    rev: v1.1.386
+    rev: v1.1.391
     hooks:
       - id: pyright
 
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.4.28
+    rev: 0.5.11
     hooks:
       - id: uv-lock
diff --git a/.vscode/extensions.json b/.vscode/extensions.json
@@ -12,6 +12,7 @@
     "mhutchie.git-graph",
     "ms-python.python",
     "ms-python.vscode-pylance",
+    "ms-toolsai.jupyter",
     "ms-toolsai.vscode-jupyter-cell-tags",
     "ms-vscode.live-server",
     "ms-vsliveshare.vsliveshare",
@@ -32,6 +33,7 @@
     "ms-python.isort",
     "ms-python.mypy-type-checker",
     "ms-python.pylint",
+    "ms-toolsai.vscode-jupyter-slideshow",
     "travisillig.vscode-json-stable-stringify",
     "tyriar.sort-lines"
   ]

diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -33,12 +33,6 @@
   "files.associations": {
     "**/pixi.lock": "yaml"
   },
-  "files.watcherExclude": {
-    "**/*_cache/**": true,
-    "**/.eggs/**": true,
-    "**/.git/**": true,
-    "**/.tox/**": true
-  },
   "git.rebaseWhenSync": true,
   "github-actions.workflows.pinned.workflows": [".github/workflows/ci.yml"],
   "gitlens.telemetry.enabled": false,

diff --git a/docs/000/index.ipynb b/docs/000/index.ipynb
@@ -329,7 +329,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Unfortunately, the {mod}`jax.numpy` API does not interface to {mod}`numpy.emath`. It is possible to decorate {func}`numpy.emath.sqrt` be decorated with {func}`jax.jit`, but that **only works with static, hashable arguments**:"
+    "Unfortunately, the {mod}`jax.numpy` API does not interface to [`numpy.emath`](https://numpy.org/doc/2.0/reference/routines.emath.html). It is possible to decorate {func}`numpy.emath.sqrt` be decorated with {func}`jax.jit`, but that **only works with static, hashable arguments**:"
    ]
   },
   {

diff --git a/docs/001/index.ipynb b/docs/001/index.ipynb
@@ -329,7 +329,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Just as noted in {ref}`000/index:Complex square root` though, {mod}`numpy.emath` is not provided by the NumPy API of {doc}`JAX <jax:index>`. As discussed there, we can at most decorate the {mod}`numpy.emath` version with {func}`jax.jit` and work with static arguments only:"
+    "Just as noted in {ref}`000/index:Complex square root` though, [`numpy.emath`](https://numpy.org/doc/2.0/reference/routines.emath.html) is not provided by the NumPy API of {doc}`JAX <jax:index>`. As discussed there, we can at most decorate the [`numpy.emath`](https://numpy.org/doc/2.0/reference/routines.emath.html) version with {func}`jax.jit` and work with static arguments only:"
    ]
   },
   {
@@ -401,7 +401,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "As concluded in {ref}`000/index:Conditional square root`, the alternative to lambdify to {mod}`numpy.emath` is to lambdify to {func}`numpy.select`. This has some caveats, though, like that you should not use `__dict__`. Worse, JAX is not immediately supported as backend. Fortunately, we now know how to overwrite lambdify methods.\n",
+    "As concluded in {ref}`000/index:Conditional square root`, the alternative to lambdify to [`numpy.emath`](https://numpy.org/doc/2.0/reference/routines.emath.html) is to lambdify to {func}`numpy.select`. This has some caveats, though, like that you should not use `__dict__`. Worse, JAX is not immediately supported as backend. Fortunately, we now know how to overwrite lambdify methods.\n",
     "\n",
     "An additional tool we need now is to {doc}`define a new printer class <sympy:modules/printing>` for JAX, so that we can also define a special rendering method for `ComplexSqrt` in the case of JAX. Most of its printing methods should be the same as that of SymPy's `NumPyPrinter`, the rest we can overwrite:"
    ]

diff --git a/docs/002/pyproject.toml b/docs/002/pyproject.toml
@@ -14,10 +14,11 @@ ignore = [
     "F404",
     "G004",
     "ISC001",
+    "LOG015",
     "PD901",
     "PLR2004",
     "S101",
     "T201",
-    "TCH003",
+    "TC003",
 ]
 select = ["ALL"]
diff --git a/docs/014/pyproject.toml b/docs/014/pyproject.toml
@@ -29,7 +29,7 @@ ignore = [
     "PYI034",
     "S101",
     "SIM108",
-    "TCH003",
+    "TC003",
 ]
 select = ["ALL"]
 

diff --git a/docs/020/index.ipynb b/docs/020/index.ipynb
@@ -1028,7 +1028,7 @@
    "metadata": {},
    "source": [
     ":::{note}\n",
-    "You can also try different minimizers, like {class}`~zfit.minimizers.minimizers_scipy.ScipyTrustConstrV1`, but {class}`~zfit.minimizers.minimizer_minuit.Minuit` seems to perform best.\n",
+    "You can also try different minimizers, like [`ScipyTrustConstrV1`](https://zfit.readthedocs.io/en/v0.18.1/user_api/minimize/_generated/minimizers/zfit.minimize.ScipyTrustConstrV1.html), but {class}`~zfit.minimizers.minimizer_minuit.Minuit` seems to perform best.\n",
     ":::"
    ]
   },

diff --git a/docs/025/index.ipynb b/docs/025/index.ipynb
@@ -68,7 +68,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    ":::{seealso} [Lecture 17](https://compwa.github.io/strong2020-salamanca/lecture17.html) on collision theory of the [STRONG2020 HaSP School](https://indico.ific.uv.es/event/6803) by Miguel Albaladejo.\n",
+    ":::{seealso} [Lecture 17](https://compwa.github.io/strong2020-salamanca/lecture17/) on collision theory of the [STRONG2020 HaSP School](https://indico.ific.uv.es/event/6803) by Miguel Albaladejo.\n",
     "<!-- cspell:ignore Albaladejo -->\n",
     ":::\n",
     "\n",

diff --git a/docs/030/pyproject.toml b/docs/030/pyproject.toml
@@ -26,7 +26,7 @@ ignore = [
     "PLC2401",
     "PLR0913",
     "PLR0917",
-    "TCH002",
+    "TC002",
 ]
 select = ["ALL"]
 

diff --git a/docs/031/pyproject.toml b/docs/031/pyproject.toml
@@ -29,7 +29,7 @@ ignore = [
     "PLR0913",
     "PLR0917",
     "S101",
-    "TCH002",
+    "TC002",
 ]
 select = ["ALL"]
 

diff --git a/docs/032/pyproject.toml b/docs/032/pyproject.toml
@@ -28,7 +28,7 @@ ignore = [
     "PLR0913",
     "PLR0917",
     "S101",
-    "TCH00",
+    "TC00",
 ]
 select = ["ALL"]