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args.sidecars fixes #20

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args.sidecars fixes #20

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009fe46
Update file_mapper_script.py
ericearl Jun 1, 2024
d20a69f
Update file_mapper_script.py
ericearl Jun 2, 2024
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28 changes: 16 additions & 12 deletions file_mapper_script.py
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Original file line number Diff line number Diff line change
Expand Up @@ -208,33 +208,37 @@ def parse_data(contents, verbose=False, testdebug=False):
elif args.overwrite:
do_action(source, destination, args.action,
overwrite=args.overwrite, testdebug=args.testdebug, relsym=args.relative_symlink)
if args.sidecars:
if args.sidecars and ( source.endswith('.nii') or source.endswith('.nii.gz') ):
json_src, json_dest = map_sidecars(source, destination)
do_action(json_src, json_dest, args.action,
testdebug=args.testdebug,
relsym=args.relative_symlink)
if os.path.isfile(json_src):
do_action(json_src, json_dest, args.action,
overwrite=args.overwrite,
testdebug=args.testdebug,
relsym=args.relative_symlink)
if verbose:
print("File has been overwritten")
elif os.path.exists(dirname):
if verbose:
print("Path already exists: " + str(dirname))
elif os.path.isdir(os.path.dirname(destination)):
do_action(source, destination, args.action, testdebug=args.testdebug, relsym=args.relative_symlink)
if args.sidecars:
if args.sidecars and ( source.endswith('.nii') or source.endswith('.nii.gz') ):
json_src, json_dest = map_sidecars(source, destination)
do_action(json_src, json_dest, args.action,
testdebug=args.testdebug,
relsym=args.relative_symlink)
if os.path.isfile(json_src):
do_action(json_src, json_dest, args.action,
testdebug=args.testdebug,
relsym=args.relative_symlink)
else:
os.makedirs( dirname )
if verbose:
print("Path has been made: " + str(dirname))
do_action(source, destination, args.action, testdebug=args.testdebug, relsym=args.relative_symlink)
if args.sidecars:
if args.sidecars and ( source.endswith('.nii') or source.endswith('.nii.gz') ):
json_src, json_dest = map_sidecars(source, destination)
do_action(json_src, json_dest, args.action,
testdebug=args.testdebug,
relsym=args.relative_symlink)
if os.path.isfile(json_src):
do_action(json_src, json_dest, args.action,
testdebug=args.testdebug,
relsym=args.relative_symlink)



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