October 10, 2023

This release contains an updated analysis, code, and subsequent figures following reviewer's comments from the initial submission to Cell Host & Microbe.

June 28, 2023

This release contains an updated analysis and subsequent figures following reviewer's comments from the initial submission.

February 6, 2023

Latest figures and code.

February 6, 2023

Latest figures and code.

February 2, 2023

Mainly processed all figures in Adobe Illustrator to fit journal requirements and added some minor additional figures and tables. Also re-ran the entire script to ensure reproducibility.

January 25, 2023

Updated figure names and numbers to match the manuscript

January 24, 2023

Made a minor change to the healthy donor sampleID's from: ht-###-## to hd-###-##

January 24, 2023 - Revised Figures and Code

v1.0.1

January 24, 2023 - Minor figure tweaks and saved the RProject's ".RDa…

Initial Code and Data Release

January 24, 2023

Adjusted margins of Figure_1.pdf to avoid partially cutting off the asterisks on the bottom row of plots

January 24, 2023

Updated .gitattributes (this was done to correctly show R as the programming language and not HTML).
Updated the analysis created .RData image