Cleanup AVL PI-RADS score notation (#7)

build.sh

@@ -1 +1 @@
-docker build . --tag dragon_prep:latest --tag dragon_prep:v0.2.4
+docker build . --tag dragon_prep:latest --tag dragon_prep:v0.2.5

setup.py

@@ -5,7 +5,7 @@
         long_description = fh.read()
 
     setuptools.setup(
-        version='0.2.4',
+        version='0.2.5',
         author_email='[email protected]',
         long_description=long_description,
         long_description_content_type="text/markdown",

src/dragon_prep/prepare_avl.py

@@ -53,6 +53,9 @@ def prepare_avl_radiology_reports(input_dir: Path) -> pd.DataFrame:
     # merge with radiology reports
     df["text"] = df["uid"].map(df_reports["text"].to_dict())
 
+    # cleanup pirads lesions notation
+    df["pirads_lesions"] = df["pirads_lesions"].str.replace(".", ",")
+
     return df
 
 

tests/development-README.md

@@ -33,4 +33,4 @@ AutoPEP8 for formatting (this can be done automatically on save, see e.g. https:
 # Push release to PyPI
 1. Increase version in setup.py, and set below
 2. Build: `python -m build`
-3. Distribute package to PyPI: `python -m twine upload dist/*0.2.4*`
+3. Distribute package to PyPI: `python -m twine upload dist/*0.2.5*`