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nf-core linting

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Update IQTREE to handle multifurcation.
nf-core linting #20: Commit f086512 pushed by DOH-JDJ0303
February 3, 2025 17:08 25s dev
dev
February 3, 2025 17:08 25s
patching issues when getting database info
nf-core linting #19: Commit 50492cd pushed by DOH-JDJ0303
December 12, 2024 22:41 1m 6s dev
dev
December 12, 2024 22:41 1m 6s
specify quote when reading samplesheet
nf-core linting #18: Commit 96d7af9 pushed by DOH-JDJ0303
December 9, 2024 16:32 1m 2s dev
dev
December 9, 2024 16:32 1m 2s
Merge pull request #15 from DOH-JDJ0303/pp_db_build_tools
nf-core linting #17: Commit eb273d9 pushed by DOH-JDJ0303
November 13, 2024 18:25 52s dev
dev
November 13, 2024 18:25 52s
add pp db build tools
nf-core linting #16: Pull request #15 opened by DOH-HNH0303
November 13, 2024 18:23 1m 4s pp_db_build_tools
November 13, 2024 18:23 1m 4s
Merge pull request #14 from DOH-JDJ0303/any_cluster
nf-core linting #15: Commit 0c4e5ab pushed by DOH-JDJ0303
November 13, 2024 16:16 1m 0s dev
dev
November 13, 2024 16:16 1m 0s
Update to include any cluster scheme. Also added scaffold for future …
nf-core linting #14: Pull request #14 opened by DOH-JDJ0303
November 13, 2024 16:16 1m 3s any_cluster
November 13, 2024 16:16 1m 3s
Add pp db build tools
nf-core linting #13: Pull request #13 opened by DOH-HNH0303
November 13, 2024 03:22 1m 4s pp_db_build_tools
November 13, 2024 03:22 1m 4s
updating with PopPUNK defaults
nf-core linting #12: Commit ac497c8 pushed by DOH-JDJ0303
October 23, 2024 21:42 1m 3s dev
dev
October 23, 2024 21:42 1m 3s
Adding PopPUNK QC options
nf-core linting #11: Commit e01ffb9 pushed by DOH-JDJ0303
October 23, 2024 20:50 1m 1s dev
dev
October 23, 2024 20:50 1m 1s
v1.0.0
nf-core linting #10: Release v1.0.0 published by DOH-JDJ0303
October 18, 2024 15:12 1m 19s
October 18, 2024 15:12 1m 19s
Dev viz
nf-core linting #9: Pull request #11 opened by DOH-JDJ0303
October 9, 2024 22:16 1m 4s dev_viz
October 9, 2024 22:16 1m 4s
Assemblies now formatted and pushed to database. Updated some databas…
nf-core linting #8: Pull request #10 opened by DOH-JDJ0303
September 10, 2024 17:49 1m 11s dev_viz_assembly
September 10, 2024 17:49 1m 11s
Docker Hub -> ECR
nf-core linting #7: Pull request #9 opened by DOH-JDJ0303
July 5, 2024 15:58 56s ecr
ecr
July 5, 2024 15:58 56s
database info gathered as final step
nf-core linting #6: Pull request #8 opened by DOH-JDJ0303
April 11, 2024 16:14 1m 18s db_info
April 11, 2024 16:14 1m 18s
database directory is created if it doesn't exist when using 'PREPARE…
nf-core linting #5: Pull request #6 opened by DOH-JDJ0303
March 25, 2024 17:25 1m 7s mkdirs_db
March 25, 2024 17:25 1m 7s
beta
nf-core linting #4: Release beta published by DOH-JDJ0303
March 14, 2024 21:35 1m 47s
March 14, 2024 21:35 1m 47s
More qc
nf-core linting #3: Pull request #3 opened by DOH-JDJ0303
February 22, 2024 19:37 1m 16s more_qc
February 22, 2024 19:37 1m 16s
βeta
nf-core linting #2: Release βeta published by DOH-JDJ0303
January 4, 2024 17:12 1m 16s
January 4, 2024 17:12 1m 16s