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Merge branch 'sarich/testing/update-grid-tests' (PR #5316)
New scripts to test grid utilities. These tests are running nightly on https://jenkins-gce.cels.anl.gov/job/E3SM_grid_tests This includes test for: cime/tools/mapping/gen_domain_files (already in cime) components/eam/tools/topo_tool/cube_to_target components/eam/tools/mkatmsrffile components/elm/tools/mksurfdata_map [BFB]
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,157 @@ | ||
| #!/bin/bash | ||
|
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| display_help() { | ||
| echo "Usage: $0 " >&2 | ||
| echo | ||
| echo " -e, --e3sm_root <e3sm_root_directory> Specify location of E3SM" | ||
| echo " -h, --help Display this message" | ||
| echo " -i, --inputdata_root <data_directory> Specify location of climate inputdata" | ||
| echo " -r, --reference_files <ref_directory> Specify location where files" | ||
|
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| echo " 1x1d.nc, ne30np4_pentagons.091226.nc," | ||
| echo " map_1x1_to_ne30np4_aave.nc" | ||
| echo " are located" | ||
| echo | ||
| echo "NOTE: requires tempestremap and ESMF tools to be in PATH environment variable" | ||
| } | ||
|
|
||
| e3sm_root="default" | ||
| test_root="default" | ||
| inputdata_root="default" | ||
| reference_files="default" | ||
|
|
||
| for arg in "$@" | ||
| do | ||
| case $arg in | ||
| -e=*|--e3sm_root=*) | ||
| e3sm_root="${arg#*=}" | ||
| shift | ||
| ;; | ||
|
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||
| -i=*|--inputdata_root=*) | ||
| inputdata_root="${arg#*=}" | ||
| shift | ||
| ;; | ||
|
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| -r=*|--reference_files=*) | ||
| reference_files="${arg#*=}" | ||
| shift | ||
| ;; | ||
|
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||
| -*) | ||
| display_help | ||
| exit 1; | ||
| ;; | ||
|
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||
| -h|--help) | ||
| display_help | ||
| exit 0; | ||
| ;; | ||
|
|
||
| esac | ||
| done | ||
|
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||
| if [[ ${e3sm_root} == "default" ]]; then | ||
| echo "Error: e3sm_root not set" >&2 | ||
| display_help | ||
| exit 1; | ||
| fi | ||
|
|
||
| if [[ ${inputdata_root} == "default" ]]; then | ||
| echo "Error: inputdata_root not set" >&2 | ||
| display_help | ||
| exit 1; | ||
| fi | ||
|
|
||
| if [[ ${reference_files} == "default" ]]; then | ||
| echo "Error: reference_files not set" >&2 | ||
| display_help | ||
| exit 1; | ||
| fi | ||
|
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| output_root=$PWD | ||
| cime_root=${e3sm_root}/cime | ||
|
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| # Add testing bin to path | ||
| PATH=${test_root}/bin:${PATH} | ||
|
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| # We will redirect verbose test log output to a file; remove any existing | ||
| # versions of this file first | ||
| test_log=${PWD}/test.out | ||
| rm -f ${test_log} | ||
|
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||
|
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| srf_file=${reference_files}/1x1d.nc | ||
| atm_file=${reference_files}/ne30np4_pentagons.091226.nc | ||
| land_file=${inputdata_root}/atm/cam/chem/trop_mozart/dvel/regrid_vegetation.nc | ||
| soilw_file=${inputdata_root}/atm/cam/chem/trop_mozart/dvel/clim_soilw.nc | ||
| srf2atm_file=${reference_files}/map_1x1_to_ne30np4_aave.nc | ||
|
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| for i in ${srf_file} ${atm_file} ${land_file} ${soilw_file} ${srf2atm_file} | ||
| do | ||
| if [ ! -f $i ]; then | ||
| echo "Error: file ${i} not found" >&2 | ||
| exit 1 | ||
| fi | ||
| done | ||
|
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| output_file=${PWD}/atmsrf_ne30np4.nc | ||
|
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| echo "build mkatmsrrfile in ${PWD}/builds ..." >> ${test_log} | ||
| mkdir -p builds | ||
| cd builds | ||
| ${cime_root}/CIME/scripts/configure --mpilib mpich --macros-format Makefile >> ${test_log} 2>&1 | ||
|
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| if [ ! -f .env_mach_specific.sh ]; then | ||
| if [ ! -f .env_mach_specific.sh ]; then | ||
| echo "ERROR running ${cime_root}/CIME/scripts/configure" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
| fi | ||
| cp ${e3sm_root}/components/eam/tools/mkatmsrffile/* . | ||
|
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| # Edit Makefile to use variables created by configure | ||
| sed "s:^FFLAGS:#FFLAGS:g" Makefile | sed "s:^INC:#INC^:g" | sed "s:^LIB:#LIB:g" > Makefile.tmp | ||
| echo "include Macros.make" > Makefile | ||
| echo 'FC=${MPIFC}' >> Makefile | ||
| echo 'LIB=${SLIBS}' >> Makefile | ||
| echo 'FFLAGS+=-I${NETCDF_PATH}/include' >> Makefile | ||
| cat Makefile.tmp >> Makefile | ||
|
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| cat <<EOF > nml_atmsrf | ||
| &input | ||
| srfFileName = '${srf_file}' | ||
| atmFileName = '${atm_file}' | ||
| landFileName = '${land_file}' | ||
| soilwFileName = '${soilw_file}' | ||
| srf2atmFmapname = '${srf2atm_file}' | ||
| outputFileName = '${output_file}' | ||
| / | ||
| EOF | ||
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|
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| # | ||
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| (. .env_mach_specific.sh && export FC=gfortran && export LIB_NETCDF=${NETCDF_FORTRAN_PATH}/lib && export INC_NETCDF=${NETCDF_FORTRAN_PATH/include} && make) >> ${test_log} 2>&1 | ||
| if [ ! -f mkatmsrffile ]; then | ||
| echo "ERROR building mkatmsrffile" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
|
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| rm -f ${output_file} | ||
| echo "Running mkatmsrffile" >> ${test_log} 2>&1 | ||
| (. .env_mach_specific.sh && ./mkatmsrffile ) >> ${test_log} | ||
|
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| if [ ! -f ${output_file} ]; then | ||
| echo "Error: file ${i} not found" >&2 | ||
| exit 1 | ||
| else | ||
| echo "output file ${i} created" >> ${test_log} 2>&1 | ||
| fi | ||
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| exit 0 |
161 changes: 161 additions & 0 deletions
161
components/eam/tools/topo_tool/cube_to_target/test_cube_to_target.sh
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,161 @@ | ||
| #!/bin/bash | ||
|
|
||
| display_help() { | ||
| echo "Usage: $0 " >&2 | ||
| echo | ||
| echo " -e, --e3sm_root <e3sm_root_directory> Specify location of E3SM" | ||
| echo " -h, --help Display this message" | ||
| echo " -i, --inputdata_root <data_directory> Specify location of climate inputdata" | ||
| echo | ||
| } | ||
|
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||
|
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| # get arguments | ||
| # Need --e3sm_root= | ||
| # --reference_files= | ||
| # --inputdata_root= | ||
|
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| e3sm_root="default" | ||
| test_root="default" | ||
| inputdata_root="default" | ||
|
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||
| for arg in "$@" | ||
| do | ||
| case $arg in | ||
| -e=*|--e3sm_root=*) | ||
| e3sm_root="${arg#*=}" | ||
| shift | ||
| ;; | ||
|
|
||
| -i=*|--inputdata_root=*) | ||
| inputdata_root="${arg#*=}" | ||
| shift | ||
| ;; | ||
|
|
||
| -*) | ||
| display_help | ||
| exit 1; | ||
| ;; | ||
|
|
||
| -h|--help) | ||
| display_help | ||
| exit 0; | ||
| ;; | ||
|
|
||
| esac | ||
| done | ||
|
|
||
| if [[ ${e3sm_root} == "default" ]]; then | ||
| echo "Error: e3sm_root not set" >&2 | ||
| display_help | ||
| exit 1; | ||
| fi | ||
|
|
||
| if [[ ${inputdata_root} == "default" ]]; then | ||
| echo "Error: inputdata_root not set" >&2 | ||
| display_help | ||
| exit 1; | ||
| fi | ||
|
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||
| output_root=$PWD | ||
| cime_root=${e3sm_root}/cime | ||
|
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| # Add testing bin to path | ||
| PATH=${test_root}/bin:${PATH} | ||
|
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| # We will redirect verbose test log output to a file; remove any existing | ||
| # versions of this file first | ||
| test_log=${PWD}/test.out | ||
| rm -f ${test_log} | ||
|
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||
|
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| generatecsmesh=`which GenerateCSMesh` | ||
| generatevolumetricmesh=`which GenerateVolumetricMesh` | ||
| convertmeshtoscrip=`which ConvertMeshToSCRIP` | ||
|
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| if [ "${generatecsmesh}x" == "x" ]; then | ||
| echo "ERROR: tempestremap tool GenerateCSMesh not found in PATH" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
|
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| if [ "${generatevolumetricmesh}x" == "x" ]; then | ||
| echo "ERROR: tempestremap tool GenerateVolumetricMesh not found in PATH" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
|
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| if [ "${convertmeshtoscrip}x" == "x" ]; then | ||
| echo "ERROR: tempestremap tool ConvertMeshToScrip not found in PATH" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
|
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|
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| meshfile=ne30.g | ||
| gridfile=ne30pg4.g | ||
| scripfile=ne30pg4_scrip.nc | ||
| target_grid=${reference_files}/ne30pg4_scrip.nc | ||
| input_topo=${inputdata_root}/atm/cam/topo/USGS-topo-cube3000.nc | ||
| output_topo=${PWD}/output.nc | ||
|
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| echo "Running ${generatecsmesh}" >> ${test_log} 2>&1 | ||
| (${generatecsmesh} --alt --res 30 --file ${meshfile}) >> ${test_log} 2>&1 | ||
| if [ ! -f ${meshfile} ]; then | ||
| echo "ERROR: GenerateCSMesh: no ${meshfile} file created" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
|
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| echo "Running ${generatevolumetricmesh}" >> ${test_log} 2>&1 | ||
| (${generatevolumetricmesh} --in ${meshfile} --out ${gridfile}) >> ${test_log} 2>&1 | ||
| if [ ! -f ${gridfile} ]; then | ||
| echo "ERROR: GenerateVolumetricMesh: no ${gridfile} file created" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
|
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| echo "Running ${convertmeshtoscrip}" >> ${test_log} 2>&1 | ||
| (${convertmeshtoscrip} --in ${meshfile} --out ${scripfile}) >> ${test_log} 2>&1 | ||
| if [ ! -f ${scripfile} ]; then | ||
| echo "ERROR: ConvertMeshToSCRIP: no ${scripfile} file created" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
|
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||
|
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| echo "build cube_to_data in ${PWD}/builds ..." >> ${test_log} | ||
| mkdir -p builds | ||
| cd builds | ||
| ${cime_root}/CIME/scripts/configure --mpilib mpich --macros-format Makefile >> ${test_log} 2>&1 | ||
|
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| if [ ! -f .env_mach_specific.sh ]; then | ||
| if [ ! -f .env_mach_specific.sh ]; then | ||
| echo "ERROR running ${cime_root}/CIME/scripts/configure" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
| fi | ||
|
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| cp ${e3sm_root}/components/eam/tools/topo_tool/cube_to_target/* . | ||
| #Edit Makefile to use macros defined by configure in Macros.make | ||
| sed "s:^FFLAGS:#FFLAGS:g" Makefile | sed "s:^LDFLAGS:#LDFLAGS:g" > Makefile.tmp | ||
| echo "include Macros.make" > Makefile | ||
| echo 'FC=${MPIFC}' >> Makefile | ||
| echo 'LDFLAGS=${SLIBS}' >> Makefile | ||
| echo 'FFLAGS+=-I${NETCDF_PATH}/include' >> Makefile | ||
| cat Makefile.tmp >> Makefile | ||
|
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| # Compile | ||
| (. .env_mach_specific.sh && export FC=gfortran && export LIB_NETCDF=${NETCDF_FORTRAN_PATH}/lib && export INC_NETCDF=${NETCDF_FORTRAN_PATH/include} && make) >> ${test_log} 2>&1 | ||
|
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| if [ ! -f cube_to_target ]; then | ||
| echo "ERROR building cube_to_target" >&2 | ||
| echo "cat ${test_log} for more info" >&2 | ||
| exit 1 | ||
| fi | ||
|
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| echo "Running cube_to_target" >> ${test_log} 2>&1 | ||
| (. .env_mach_specific.sh && ./build/cube_to_target --target-grid ${target_grid} --input-topography ${input_topo} --output-topography ${output_topo} ) >> ${test_log} | ||
|
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| exit 0 |
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