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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,17 +1,19 @@ | ||
| source "https://rubygems.org" | ||
| source 'https://rubygems.org' | ||
|
|
||
| gem "elixir-toolkit-theme-plugins", "~> 0.1.9" | ||
| gem "webrick", "~> 1.7" | ||
| gem "jekyll", "~> 4.3.1" | ||
| gem "jemoji", "~> 0.13.0" | ||
| gem "kramdown-parser-gfm", "~> 1.1" | ||
| gem 'elixir-toolkit-theme-plugins', '~> 0.1.9' | ||
| gem 'webrick', '~> 1.7' | ||
| gem 'jekyll', '~> 4.3.1' | ||
| gem 'jemoji', '~> 0.13.0' | ||
| gem 'kramdown-parser-gfm', '~> 1.1' | ||
| gem 'jekyll-octicons' | ||
|
|
||
| group :jekyll_plugins do | ||
| gem "jekyll-redirect-from", "~> 0.16.0" | ||
| gem "jekyll-sitemap", "~> 1.4" | ||
| gem "jekyll-github-metadata", "~> 2.15" | ||
| gem "jekyll-relative-links", "~> 0.6" | ||
| gem "jekyll-seo-tag", "~> 2.8" | ||
| gem "jekyll-remote-theme" | ||
| gem 'jekyll-redirect-from', '~> 0.16.0' | ||
| gem 'jekyll-sitemap', '~> 1.4' | ||
| gem 'jekyll-github-metadata', '~> 2.15' | ||
| gem 'jekyll-relative-links', '~> 0.6' | ||
| gem 'jekyll-seo-tag', '~> 2.8' | ||
| gem 'jekyll-scholar', '~> 7.1.3' | ||
| gem 'jekyll-remote-theme' | ||
| end | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,148 @@ | ||
| @article{field2008migs, | ||
| title={The minimum information about a genome sequence (MIGS) specification}, | ||
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| doi={10.1038/nbt1360}, | ||
| url={https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2409278/} | ||
| } | ||
|
|
||
| @article{ham2012jbeiice, | ||
| title={Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools}, | ||
| author={Ham, T. S. and et al.}, | ||
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| @article{hecht2018bacterial, | ||
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| @article{kuwahara2017sbolme, | ||
| title={SBOLme: a Repository of SBOL Parts for Metabolic Engineering}, | ||
| author={Kuwahara, H. and et al.}, | ||
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| url={https://pubmed.ncbi.nlm.nih.gov/28076956/} | ||
| } | ||
|
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||
| @article{maloy2007strain, | ||
| title={Strain Collections and Genetic Nomenclature}, | ||
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| journal={Methods in Enzymology}, | ||
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|
|
||
| @article{parte2020lpsn, | ||
| title={List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ}, | ||
| author={Parte, A. C. and et al.}, | ||
| journal={International journal of systematic and evolutionary microbiology}, | ||
| volume={70}, | ||
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| doi={10.1099/ijsem.0.004332}, | ||
| url={https://pubmed.ncbi.nlm.nih.gov/32701423/} | ||
| } | ||
|
|
||
| @article{sainzdemurieta2016toward, | ||
| title={Toward the First Data Acquisition Standard in Synthetic Biology}, | ||
| author={Sainz de Murieta, I. and Bultelle, M. and Kitney, R. I.}, | ||
| journal={ACS synthetic biology}, | ||
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| number={8}, | ||
| pages={817--826}, | ||
| year={2016}, | ||
| doi={10.1021/acssynbio.5b00222}, | ||
| url={https://pubmed.ncbi.nlm.nih.gov/26854090/} | ||
| } | ||
|
|
||
| @article{sarkans2018biostudies, | ||
| title={The BioStudies database—one stop shop for all data supporting a life sciences study}, | ||
| author={Sarkans, U. and et al.}, | ||
| journal={Nucleic Acids Research}, | ||
| pages={D1266--D1270}, | ||
| year={2018}, | ||
| doi={10.1093/nar/gkx965}, | ||
| url={https://pubmed.ncbi.nlm.nih.gov/29069414/} | ||
| } | ||
|
|
||
| @article{spidlen2021data, | ||
| title={Data File Standard for Flow Cytometry, Version FCS 3.2}, | ||
| author={Spidlen, J. and et al.}, | ||
| journal={Cytometry. Part A: the journal of the International Society for Analytical Cytology}, | ||
| volume={99}, | ||
| number={1}, | ||
| pages={100--102}, | ||
| year={2021}, | ||
| doi={10.1002/cyto.a.24225}, | ||
| url={https://pubmed.ncbi.nlm.nih.gov/32881398/} | ||
| } | ||
|
|
||
| @article{strenda2014standards, | ||
| title={Standards for Reporting Enzyme Data: The STRENDA Consortium: What it aims to do and why it should be helpful}, | ||
| journal={Perspectives in Science}, | ||
| volume={1}, | ||
| number={1-6}, | ||
| pages={131--137}, | ||
| year={2014}, | ||
| doi={10.1016/j.pisc.2014.02.012}, | ||
| url={https://www.sciencedirect.com/science/article/pii/S2213020914000135} | ||
| } | ||
|
|
||
| @article{tellechealuzardo2020linking, | ||
| title={Linking Engineered Cells to Their Digital Twins: A Version Control System for Strain Engineering}, | ||
| author={Tellechea-Luzardo, J. and et al.}, | ||
| journal={ACS synthetic biology}, | ||
| volume={9}, | ||
| number={3}, | ||
| pages={536--545}, | ||
| year={2020}, | ||
| doi={10.1021/acssynbio.9b00400}, | ||
| url={https://pubmed.ncbi.nlm.nih.gov/32078768/} | ||
| } | ||
|
|
||
| @article{tenhoopen2015m2b3, | ||
| title={Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards}, | ||
| author={Ten Hoopen, P. and et al.}, | ||
| journal={Standards in genomic sciences}, | ||
| volume={10}, | ||
| pages={20}, | ||
| year={2015}, | ||
| doi={10.1186/s40793-015-0001-5}, | ||
| url={https://pubmed.ncbi.nlm.nih.gov/26203332/} | ||
| } | ||
|
|
||
| @article{zhang2017sboldesigner, | ||
| title={SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design}, | ||
| author={Zhang, M. and et al.}, | ||
| journal={ACS synthetic biology}, | ||
| volume={6}, | ||
| number={7}, | ||
| pages={1150--1160}, | ||
| year={2017}, | ||
| doi={10.1021/acssynbio.6b00275}, | ||
| url={https://pubmed.ncbi.nlm.nih.gov/28441476/} | ||
| } |
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