Merge pull request #9 from NCAR/hgoelzer/dutchbuild

Add build scripts for dutch national clusters lisa and cartesius

builds/cartesius-intel/cartesius-intel-cmake.sh

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+# Run this script by typing: source cartesius-intel-cmake
+# After this script completes, type: make -j 8
+# If rebuilding, type 'make clean' before running 'make -j 8'
+
+# This cmake configuration script is set up to perform a parallel build without Trilinos
+
+# Set path to top cism directory
+# Note, this is an easy way to build out of source.
+# In directory you want to build in, run:
+#  source $CISM/builds/cartesius-intel/cartesius-intel-serial-cmake $CISM
+# where $CISM is the path to the top level cism directory.
+if [ $# -eq 0 ]
+then
+    cism_top="../.." 
+else
+    cism_top=${1%/}
+fi
+
+echo CISM: "${cism_top}"
+
+module purge
+module load surfsara 
+module load hdf5/impi/intel/1.8.14
+module load cmake/3.5.2
+module load mkl/11.2
+module load netcdf-fortran/impi/intel/4.4.2
+module load netcdf-c/impi/intel/4.3.3.1
+module load python/2.7.9
+
+## Resulting module list 
+# 1) compilerwrappers                7) hdf5/impi/intel/1.8.14(default)           
+# 2) c/intel/15.0.0(default)         8) cmake/3.5.2(default)                      
+# 3) fortran/intel/15.0.0(default)   9) mkl/11.2(default)                         
+# 4) mpi/impi/5.0.3.048(default)    10) netcdf-fortran/impi/intel/4.4.2(default)  
+# 5) bull                           11) netcdf-c/impi/intel/4.3.3.1(default)      
+# 6) surfsara                       12) python/2.7.9(default)                     
+
+## where 'module load surfsara' will give you the following 
+# 1) compilerwrappers          3) fortran/intel/15.0.0(default)   5) bull      
+# 2) c/intel/15.0.0(default)   4) mpi/impi/5.0.3.048(default)     6) surfsara  
+
+# remove old build data:
+rm -f ./CMakeCache.txt
+rm -fr ./CMakeFiles
+
+echo
+echo "Doing CMake Configuration step"
+
+# A few non-intuitive things:
+#
+# - CISM_FORCE_FORTRAN_LINKER: without this, cmake tries to use a C++ linker, which doesn't work
+#
+# - CISM_INCLUDE_IMPLICIT_LINK_LIBRARIES: if this is on (the default), some
+#   libraries are included on the link line which can't be found (e.g.,
+#   hdf5). This may be related to the fact that trilinos on yellowstone is old,
+#   and/or the fact that cmake wants to use a C++ linker but we're telling it to
+#   use a fortran linker.
+
+cmake \
+  -D CISM_BUILD_CISM_DRIVER:BOOL=ON \
+  -D CISM_ENABLE_BISICLES=OFF \
+  -D CISM_ENABLE_FELIX=OFF \
+\
+  -D CISM_USE_TRILINOS:BOOL=OFF \
+  -D CISM_MPI_MODE:BOOL=ON \
+  -D CISM_SERIAL_MODE:BOOL=OFF \
+\
+  -D CISM_USE_GPTL_INSTRUMENTATION:BOOL=OFF \
+  -D CISM_COUPLED:BOOL=OFF \
+  -D CISM_USE_CISM_FRONT_END:BOOL=OFF \
+\
+  -D CISM_TRILINOS_DIR=$SURFSARA_TRILINOS_ROOT \
+  -D CISM_NETCDF_DIR=$SURFSARA_NETCDFC_ROOT \
+  -D CISM_FORCE_FORTRAN_LINKER:BOOL=OFF \
+  -D CISM_INCLUDE_IMPLICIT_LINK_LIBRARIES:BOOL=ON \
+  -D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF \
+\
+  -D CMAKE_CXX_COMPILER=mpiicpc \
+  -D CMAKE_C_COMPILER=mpiicc \
+  -D CMAKE_Fortran_COMPILER=mpiifort \
+\
+  -D CMAKE_Fortran_FLAGS:STRING="-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -xHost -O2 -mkl" \
+  -D CMAKE_C_FLAGS:STRING="-O2 -fp-model precise -xHost" \
+  -D CMAKE_CXX_FLAGS:STRING="-O2 -fp-model precise -xHost" \
+\
+  -D CISM_EXTRA_LIBS:STRING="-lnetcdff" \
+  "${cism_top}"
+
+# Note: last argument above  "../.." or ${cism_top} is path to top cism directory

builds/cartesius-intel/cartesius-intel-serial-cmake.sh

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+# Run this script by typing: source cartesius-intel-serial-cmake
+# After this script completes, type: make 
+# If rebuilding, type 'make clean' before running 'make'
+
+# This cmake configuration script is set up to perform a serial build
+
+# Set path to top cism directory
+# Note, this is an easy way to build out of source.
+# In directory you want to build in, run:
+#  source $CISM/builds/cartesius-intel/cartesius-intel-serial-cmake $CISM
+# where $CISM is the path to the top level cism directory.
+if [ $# -eq 0 ]
+then
+    cism_top="../.." 
+else
+    cism_top=${1%/}
+fi
+
+echo CISM: "${cism_top}"
+
+module purge
+module load surfsara
+module load hdf5/serial/intel/1.8.10-patch1
+module load netcdf
+module load mkl
+module load cmake
+module load lapack/mkl
+module load blas/netlib/intel
+
+## Resulting module list 
+# 1) compilerwrappers                7) hdf5/serial/intel/1.8.10-patch1        
+# 2) c/intel/15.0.0(default)         8) netcdf/serial/intel/4.1.3(default)     
+# 3) fortran/intel/15.0.0(default)   9) mkl/11.2(default)                      
+# 4) mpi/impi/5.0.3.048(default)    10) cmake/3.5.2(default)                   
+# 5) bull                           11) lapack/mkl(default)                    
+# 6) surfsara                       12) blas/netlib/intel/2011.04.19(default)  
+
+## where 'module load surfsara' will give you the following 
+# 1) compilerwrappers          3) fortran/intel/15.0.0(default)   5) bull      
+# 2) c/intel/15.0.0(default)   4) mpi/impi/5.0.3.048(default)     6) surfsara  
+
+# remove old build data:
+rm -f ./CMakeCache.txt
+rm -fr ./CMakeFiles
+
+echo
+echo "Doing CMake Configuration step"
+
+# A few non-intuitive things:
+#
+# - CISM_FORCE_FORTRAN_LINKER: without this, cmake tries to use a C++ linker, which doesn't work
+#
+# - CISM_INCLUDE_IMPLICIT_LINK_LIBRARIES: (this is a note that applies to the
+#   parallel build with trilinos, and may or may not apply to this serial
+#   build): if this is on (the default), some libraries are included on the link
+#   line which can't be found (e.g., hdf5). This may be related to the fact that
+#   trilinos on yellowstone is old, and/or the fact that cmake wants to use a
+#   C++ linker but we're telling it to use a fortran linker.
+
+cmake \
+  -D CISM_USE_TRILINOS:BOOL=OFF \
+  -D CISM_COUPLED:BOOL=OFF \
+  -D CISM_MPI_MODE:BOOL=OFF \
+  -D CISM_SERIAL_MODE:BOOL=ON \
+  -D CISM_BUILD_SIMPLE_GLIDE:BOOL=ON \
+  -D CISM_BUILD_SIMPLE_BISICLES:BOOL=OFF \
+  -D CISM_BUILD_GLINT_EXAMPLE:BOOL=OFF \
+  -D CISM_BUILD_CISM_DRIVER:BOOL=ON \
+  -D CISM_USE_GPTL_INSTRUMENTATION:BOOL=OFF \
+  -D CISM_USE_DEFAULT_IO:BOOL=OFF \
+  -D CISM_USE_CISM_FRONT_END:BOOL=OFF \
+\
+  -D CISM_NETCDF_DIR=/hpc/sw/netcdf-fortran-4.2-intel-seq \
+  -D CISM_FORCE_FORTRAN_LINKER:BOOL=ON \
+  -D CISM_INCLUDE_IMPLICIT_LINK_LIBRARIES:BOOL=ON \
+  -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON \
+\
+  -D CMAKE_CXX_COMPILER=icpc \
+  -D CMAKE_C_COMPILER=icc \
+  -D CMAKE_Fortran_COMPILER=ifort \
+\
+  -D CMAKE_Fortran_FLAGS:STRING="-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -xHost -O2 -L/  /hpc/sw/blas-2011.04.19-intel/lib/libblas.a" \
+  -D CMAKE_C_FLAGS:STRING="-O2 -fp-model precise -xHost" \
+  -D CMAKE_CXX_FLAGS:STRING="-O2 -fp-model precise -xHost" \
+  "${cism_top}"
+
+# Note: last argument above  "../.." or ${cism_top} is path to top cism directory

builds/lisa-gnu/lisa-gnu-cmake.sh

@@ -0,0 +1,86 @@
+# Run this script by typing: source lisa-gnu-cmake
+# After this script completes, type: make -j 8
+# If rebuilding, type 'make clean' before running 'make -j 8'
+
+# This cmake configuration script is set up to perform a parallel build
+
+# Set path to top cism directory
+# Note, this is an easy way to build out of source.
+# In directory you want to build in, run:
+#  source $CISM/builds/lisa-gnu/lisa-gnu-cmake $CISM
+# where $CISM is the path to the top level cism directory.
+if [ $# -eq 0 ]
+then
+    cism_top="../.." 
+else
+    cism_top=${1%/}
+fi
+
+echo CISM: "${cism_top}"
+
+module purge
+module load surfsara
+
+# This results in the following module list
+# 1) libgfortran/32/1(default)   5) oldwheezy/1.0(default)  
+# 2) stdenv/1.3(default)         6) moab/default            
+# 3) compilerwrappers            7) surfsara/1.1(default)   
+# 4) licenses/1.0(default)
+
+# Note: netcdf was compiled by hand to match the used compiler version with
+# the same module set as above
+##netCDF-Fortran 4.4.4:
+# ./configure --prefix=/home/hgoelzer/prog/netcdf/build
+# make install
+##netCDF configure 4.5.0
+# ./configure --prefix=/home/hgoelzer/prog/netcdf/build --disable-netcdf-4 --disable-dap
+# make install
+
+NETCDF_ROOT="/home/hgoelzer/prog/netcdf/build"
+
+# Note: openmpi paths are specified manually as loading the corresponding module 
+# leads to side effects.
+
+MPI_INC_DIR="/sara/sw/openmpi-gnu-1.6.5-gf4.7/include"
+MPI_LIB_DIR="/sara/sw/openmpi-gnu-1.6.5-gf4.7/lib"
+
+# remove old build data:
+rm -f ./CMakeCache.txt
+rm -rf ./CMakeFiles
+
+echo
+echo "Doing CMake Configuration step"
+
+cmake \
+  -D CISM_BUILD_CISM_DRIVER:BOOL=ON \
+  -D CISM_ENABLE_BISICLES=OFF \
+  -D CISM_ENABLE_FELIX=OFF \
+\
+  -D CISM_USE_TRILINOS:BOOL=${CISM_USE_TRILINOS:=OFF} \
+  -D CISM_MPI_MODE:BOOL=ON \
+  -D CISM_SERIAL_MODE:BOOL=OFF \
+\
+  -D CISM_USE_GPTL_INSTRUMENTATION:BOOL=OFF \
+  -D CISM_COUPLED:BOOL=OFF \
+\
+  -D CISM_GNU=ON \
+\
+  -D CISM_TRILINOS_DIR=$CISM_TRILINOS_DIR \
+\
+  -D CISM_NETCDF_DIR=$NETCDF_ROOT \
+\
+  -D CMAKE_Fortran_FLAGS="-g -O2 -ffree-line-length-none -fPIC -fno-range-check" \
+\
+  -D CMAKE_CXX_COMPILER=mpicxx \
+  -D CMAKE_C_COMPILER=mpicc \
+  -D CMAKE_Fortran_COMPILER=mpif90 \
+\
+  -D CISM_EXTRA_LIBS:STRING="-lblas" \
+\
+  -D CISM_MPI_INC_DIR=$MPI_INC_DIR \
+  -D CISM_MPI_LIB_DIR=$MPI_LIB_DIR \
+\
+  -D CMAKE_VERBOSE_MAKEFILE=OFF \
+  "${cism_top}"
+
+# Note: last argument above  "../.." or ${cism_top} is path to top cism directory

builds/lisa-gnu/lisa-gnu-serial-cmake.sh

@@ -0,0 +1,71 @@
+# Run this script by typing: source lisa-gnu-serial-cmake
+# After this script completes, type: make 
+# If rebuilding, type 'make clean' before running 'make'
+
+# This cmake configuration script is set up to perform a serial build
+
+# Set path to top cism directory
+# Note, this is an easy way to build out of source.
+# In directory you want to build in, run:
+#  source $CISM/builds/lisa-gnu/lisa-gnu-serial-cmake $CISM
+# where $CISM is the path to the top level cism directory.
+if [ $# -eq 0 ]
+then
+    cism_top="../.." 
+else
+    cism_top=${1%/}
+fi
+
+echo CISM: "${cism_top}"
+
+module purge
+module load surfsara
+
+# Note: netcdf was compiled by hand to match the used compiler version with
+# the same module set as above
+##netCDF-Fortran 4.4.4:
+# ./configure --prefix=/home/hgoelzer/prog/netcdf/build
+# make install
+##netCDF configure 4.5.0
+# ./configure --prefix=/home/hgoelzer/prog/netcdf/build --disable-netcdf-4 --disable-dap
+# make install
+
+NETCDF_ROOT="/home/hgoelzer/prog/netcdf/build"
+
+# remove old build data:
+rm -f ./CMakeCache.txt
+rm -rf ./CMakeFiles
+
+echo
+echo "Doing CMake Configuration step"
+
+cmake \
+  -D CISM_USE_TRILINOS:BOOL=OFF \
+  -D CISM_COUPLED:BOOL=OFF \
+  -D CISM_MPI_MODE:BOOL=OFF \
+  -D CISM_SERIAL_MODE:BOOL=ON \
+  -D CISM_BUILD_CISM_DRIVER=ON \
+  -D CISM_BUILD_SIMPLE_GLIDE:BOOL=OFF \
+  -D CISM_BUILD_SIMPLE_BISICLES:BOOL=OFF \
+  -D CISM_BUILD_GLINT_EXAMPLE:BOOL=OFF \
+  -D CISM_USE_GPTL_INSTRUMENTATION:BOOL=OFF \
+  -D CISM_USE_DEFAULT_IO:BOOL=OFF \
+  -D CISM_USE_CISM_FRONT_END:BOOL=ON \
+\
+  -D CISM_GNU=ON \
+\
+  -D CISM_NETCDF_DIR=$NETCDF_ROOT \
+\
+  -D CMAKE_Fortran_FLAGS="-g -O2 -ffree-line-length-none -fPIC -fno-range-check" \
+\
+  -D CMAKE_CXX_COMPILER=g++ \
+  -D CMAKE_C_COMPILER=gcc \
+  -D CMAKE_Fortran_COMPILER=gfortran \
+\
+  -D CISM_EXTRA_LIBS:STRING="-lblas" \
+\
+  -D CMAKE_VERBOSE_MAKEFILE=ON \
+  "${cism_top}"
+
+# Note: last argument above  "../.." or ${cism_top} is path to top cism directory
+