-
Notifications
You must be signed in to change notification settings - Fork 11
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Also update package version.
- Loading branch information
Showing
5 changed files
with
290 additions
and
23 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,266 @@ | ||
|
|
||
| # How to build this Docker image: | ||
|
|
||
| # docker build --file carpetx-oneapi.dockerfile --tag einsteintoolkit/carpetx:oneapi-real64 . | ||
| # docker push einsteintoolkit/carpetx:oneapi-real64 | ||
|
|
||
| # docker build --build-arg real_precision=real32 --file carpetx-oneapi.dockerfile --tag einsteintoolkit/carpetx:oneapi-real32 . | ||
| # docker push einsteintoolkit/carpetx:oneapi-real32 | ||
|
|
||
| # FROM intel/oneapi-basekit:devel-ubuntu22.04 | ||
| FROM intel/oneapi-basekit:2024.1.0-devel-ubuntu22.04 | ||
|
|
||
| ENV DEBIAN_FRONTEND=noninteractive \ | ||
| LANGUAGE=en_US.UTF-8 \ | ||
| LANG=en_US.UTF-8 \ | ||
| LC_ALL=en_US.UTF-8 | ||
|
|
||
| RUN mkdir /cactus | ||
| WORKDIR /cactus | ||
|
|
||
| # Install system packages | ||
| # - Boost on Ubuntu requires OpenMPI | ||
| RUN apt-get update && \ | ||
| apt-get --yes --no-install-recommends install \ | ||
| ca-certificates \ | ||
| cmake \ | ||
| cvs \ | ||
| diffutils \ | ||
| g++ \ | ||
| gcc \ | ||
| gdb \ | ||
| gfortran \ | ||
| git \ | ||
| hdf5-tools \ | ||
| language-pack-en \ | ||
| less \ | ||
| libblosc-dev \ | ||
| libboost-all-dev \ | ||
| libbz2-dev \ | ||
| libfftw3-dev \ | ||
| libgit2-dev \ | ||
| libgsl-dev \ | ||
| libhdf5-dev \ | ||
| libhwloc-dev \ | ||
| libopenblas-dev \ | ||
| libopenmpi-dev \ | ||
| libpetsc-real-dev \ | ||
| libtool \ | ||
| libudev-dev \ | ||
| libyaml-cpp-dev \ | ||
| locales \ | ||
| m4 \ | ||
| meson \ | ||
| ninja-build \ | ||
| numactl \ | ||
| perl \ | ||
| pkgconf \ | ||
| python3 \ | ||
| python3-pip \ | ||
| python3-requests \ | ||
| rsync \ | ||
| subversion \ | ||
| vim \ | ||
| wget \ | ||
| zlib1g-dev \ | ||
| && \ | ||
| rm -rf /var/lib/apt/lists/* | ||
|
|
||
| # Install blosc2 | ||
| # blosc2 is a compression library, comparable to zlib | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/Blosc/c-blosc2/archive/refs/tags/v2.13.2.tar.gz && \ | ||
| tar xzf v2.13.2.tar.gz && \ | ||
| cd c-blosc2-2.13.2 && \ | ||
| cmake -B build -G Ninja -S . \ | ||
| -DCMAKE_BUILD_TYPE=RelWithDebInfo \ | ||
| -DCMAKE_INSTALL_PREFIX=/usr/local \ | ||
| -DBUILD_BENCHMARKS=OFF \ | ||
| -DBUILD_EXAMPLES=OFF \ | ||
| -DBUILD_FUZZERS=OFF \ | ||
| -DBUILD_TESTS=OFF \ | ||
| && \ | ||
| cmake --build build && \ | ||
| cmake --install build && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| # Install ADIOS2 | ||
| # ADIOS2 is a parallel I/O library, comparable to HDF5 | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/ornladios/ADIOS2/archive/refs/tags/v2.9.2.tar.gz && \ | ||
| tar xzf v2.9.2.tar.gz && \ | ||
| cd ADIOS2-2.9.2 && \ | ||
| cmake -B build -G Ninja -S . \ | ||
| -DCMAKE_BUILD_TYPE=RelWithDebInfo \ | ||
| -DCMAKE_INSTALL_PREFIX=/usr/local \ | ||
| -DBUILD_TESTING=OFF \ | ||
| -DADIOS2_BUILD_EXAMPLES=OFF \ | ||
| -DADIOS2_USE_Fortran=OFF \ | ||
| && \ | ||
| cmake --build build && \ | ||
| cmake --install build && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| # Install ASDF | ||
| # ASDF is an I/O library like HDF5 | ||
| # - depends on yaml-cpp | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/eschnett/asdf-cxx/archive/refs/tags/version/7.3.2.tar.gz && \ | ||
| tar xzf 7.3.2.tar.gz && \ | ||
| cd asdf-cxx-version-7.3.2 && \ | ||
| cmake -B build -G Ninja -S . -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_INSTALL_PREFIX=/usr/local && \ | ||
| cmake --build build && \ | ||
| cmake --install build && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| # Install NSIMD | ||
| # NSIMD allows writing explicitly SIMD-vectorized code | ||
| # Note: This assumes that the system has x86_64 CPUs | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/agenium-scale/nsimd/archive/refs/tags/v3.0.1.tar.gz && \ | ||
| tar xzf v3.0.1.tar.gz && \ | ||
| cd nsimd-3.0.1 && \ | ||
| cmake -B build -G Ninja -S . \ | ||
| -DCMAKE_BUILD_TYPE=RelWithDebInfo \ | ||
| -DCMAKE_INSTALL_PREFIX=/usr/local \ | ||
| -Dsimd=AVX2 \ | ||
| && \ | ||
| cmake --build build && \ | ||
| cmake --install build && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| # Install openPMD-api | ||
| # openPMD-api defines a standard for laying out AMR data in a file | ||
| # - depends on ADIOS2 | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/openPMD/openPMD-api/archive/refs/tags/0.15.2.tar.gz && \ | ||
| tar xzf 0.15.2.tar.gz && \ | ||
| cd openPMD-api-0.15.2 && \ | ||
| cmake -B build -G Ninja -S . \ | ||
| -DCMAKE_BUILD_TYPE=RelWithDebInfo \ | ||
| -DCMAKE_INSTALL_PREFIX=/usr/local \ | ||
| -DBUILD_TESTING=OFF \ | ||
| -DBUILD_EXAMPLES=OFF \ | ||
| && \ | ||
| cmake --build build && \ | ||
| cmake --install build && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| # Install RePrimAnd | ||
| # RePrimAnd is a physics package for nuclear equations of state | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/wokast/RePrimAnd/archive/refs/tags/v1.6.tar.gz && \ | ||
| tar xzf v1.6.tar.gz && \ | ||
| cd RePrimAnd-1.6 && \ | ||
| meson build --buildtype=release --prefix=/usr/local && \ | ||
| ninja -C build && \ | ||
| ninja -C build install && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| # Install Silo | ||
| # Silo defines a standard for laying out AMR data in a file | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/LLNL/Silo/releases/download/4.11.1/silo-4.11.1.tar.xz && \ | ||
| tar xJf silo-4.11.1.tar.xz && \ | ||
| cd silo-4.11.1 && \ | ||
| mkdir build && \ | ||
| cd build && \ | ||
| ../configure \ | ||
| --disable-fortran \ | ||
| --enable-optimization \ | ||
| --with-hdf5=/usr/lib/x86_64-linux-gnu/hdf5/serial/include,/usr/lib/x86_64-linux-gnu/hdf5/serial/lib \ | ||
| --prefix=/usr/local \ | ||
| && \ | ||
| make -j$(nproc) && \ | ||
| make -j$(nproc) install && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| # Install SimulationIO | ||
| # SimulationIO is an I/O library like HDF5 | ||
| # - depends on asdf-cxx | ||
| # - depends on yaml-cpp | ||
| # Currently disabling ASDF because there is a confusion with C++11/17 standards | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/eschnett/SimulationIO/archive/refs/tags/version/9.0.3.tar.gz && \ | ||
| tar xzf 9.0.3.tar.gz && \ | ||
| cd SimulationIO-version-9.0.3 && \ | ||
| cmake -B build -G Ninja -S . -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_INSTALL_PREFIX=/usr/local -DENABLE_ASDF_CXX=OFF && \ | ||
| cmake --build build && \ | ||
| cmake --install build && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| # Install ssht | ||
| # ssht provides spin-weighted spherical harmonics | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/astro-informatics/ssht/archive/v1.5.2.tar.gz && \ | ||
| tar xzf v1.5.2.tar.gz && \ | ||
| cd ssht-1.5.2 && \ | ||
| cmake -B build -G Ninja -S . -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_INSTALL_PREFIX=/usr/local && \ | ||
| cmake --build build && \ | ||
| cmake --install build && \ | ||
| true) && \ | ||
| rm -rf src | ||
|
|
||
| ARG real_precision=real64 | ||
|
|
||
| # Install AMReX | ||
| # AMReX provides adaptive mesh refinement | ||
| # - Enable Fortran for `docker/Dockerfile` | ||
| # - Install this last because it changes most often | ||
| # Should we keep the AMReX source tree around for debugging? | ||
| RUN mkdir src && \ | ||
| (cd src && \ | ||
| wget https://github.com/AMReX-Codes/amrex/archive/24.03.tar.gz && \ | ||
| tar xzf 24.03.tar.gz && \ | ||
| rm -rf /opt/intel/oneapi/mpi && \ | ||
| cd amrex-24.03 && \ | ||
| case $real_precision in \ | ||
| real32) precision=SINGLE;; \ | ||
| real64) precision=DOUBLE;; \ | ||
| *) exit 1;; \ | ||
| esac && \ | ||
| cmake -B build -G Ninja -S . \ | ||
| -DCMAKE_BUILD_TYPE=RelWithDebInfo \ | ||
| -DCMAKE_C_COMPILER=icx \ | ||
| -DCMAKE_CXX_COMPILER=icpx \ | ||
| -DCMAKE_PREFIX_PATH='/opt/intel/oneapi' \ | ||
| -DCMAKE_INSTALL_PREFIX=/usr/local \ | ||
| -DBUILD_SHARED_LIBS=ON \ | ||
| -DAMReX_FORTRAN=OFF \ | ||
| -DAMReX_FORTRAN_INTERFACES=OFF \ | ||
| -DAMReX_GPU_BACKEND=SYCL \ | ||
| -DAMReX_INTEL_ARCH=intel_gpu_pvc \ | ||
| -DAMReX_OMP=OFF \ | ||
| -DAMReX_PARTICLES=ON \ | ||
| -DAMReX_PRECISION="$precision" \ | ||
| -DMPI_CXX_ADDITIONAL_INCLUDE_DIRS='/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include' \ | ||
| -DMPI_CXX_LIB_NAMES='mpi_cxx;mpi;open-rte;open-pal;hwloc' \ | ||
| -DMPI_C_ADDITIONAL_INCLUDE_DIRS='/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include' \ | ||
| -DMPI_C_LIB_NAMES='mpi;open-rte;open-pal;hwloc' \ | ||
| -DMPI_hwloc_LIBRARY=/lib/x86_64-linux-gnu/libhwloc.so \ | ||
| -DMPI_mpi_LIBRARY=/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so \ | ||
| -DMPI_mpi_cxx_LIBRARY=/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so \ | ||
| -DMPI_open-pal_LIBRARY=/lib/x86_64-linux-gnu/libopen-pal.so \ | ||
| -DMPI_open-rte_LIBRARY=/lib/x86_64-linux-gnu/libopen-rte.so \ | ||
| && \ | ||
| cmake --build build && \ | ||
| cmake --install build && \ | ||
| true) && \ | ||
| rm -rf src |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters