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v2024-02-16 release candidate (#1496)
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@turbomam
turbomam authored Feb 16, 2024
1 parent 8f7499a commit 342ee2b
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10 changes: 5 additions & 5 deletions envo-base.owl
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Expand Up @@ -21,7 +21,7 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:process_attribute="http://purl.obolibrary.org/obo/envo-p/patterns/process_attribute/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo/envo-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/envo/releases/2024-02-05/envo-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/envo/releases/2024-02-16/envo-base.owl"/>
<dc:contributor rdf:resource="https://orcid.org/0000-0002-2996-719X"/>
<dc:creator rdf:resource="https://orcid.org/0000-0002-4366-3088"/>
<dc:creator>http://orcid.org/0000-0002-6601-2165</dc:creator>
Expand All @@ -39,7 +39,7 @@
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute_location.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 168 Logical Axioms: 29]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_quality_location.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 40 Logical Axioms: 6]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 21 Logical Axioms: 2]</rdfs:comment>
<owl:versionInfo>2024-02-05</owl:versionInfo>
<owl:versionInfo>2024-02-16</owl:versionInfo>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://environmentontology.org/</foaf:homepage>
</owl:Ontology>

Expand Down Expand Up @@ -108553,7 +108553,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A water body which is created in a stream by local scour or impoundment and has some structural control.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:hasBroadSynonym xml:lang="en">pool</oboInOwl:hasBroadSynonym>
<rdfs:comment xml:lang="en">Pool water depth is above average for the stream. If if all the running water in the stream was shut off, areas in the stream that still hold water are pools. Pool water velocity is below average for the reach, causing fine sediments to deposit in pools. Pools are generally longer than they are wide (unless they are plunge pools), and are 1.5 x deeper at their maximum depth than they are at their crest</rdfs:comment>
<rdfs:label xml:lang="en">stream pool</rdfs:label>
Expand All @@ -108579,7 +108579,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A hydroform which is that part of a stream where water flows swiftly and uniformly with low surface water agitation.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:hasBroadSynonym xml:lang="en">run</oboInOwl:hasBroadSynonym>
<rdfs:label xml:lang="en">stream run</rdfs:label>
</owl:Class>
Expand All @@ -108604,7 +108604,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A stream pool which is formed as a result of high-gradient, steep streams where water cascades over a rock or woody snag.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<rdfs:comment xml:lang="en">Due to the gradient and surrounding geology, this pattern continues down the stream: step (drop), pool, step, pool, etc.</rdfs:comment>
<rdfs:label xml:lang="en">step pool</rdfs:label>
</owl:Class>
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10 changes: 5 additions & 5 deletions envo.json
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Expand Up @@ -52,12 +52,12 @@
"val" : "Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl>) VersionIRI(<null>))) [Axioms: 21 Logical Axioms: 2]"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-02-05"
"val" : "2024-02-16"
}, {
"pred" : "http://xmlns.com/foaf/0.1/homepage",
"val" : "http://environmentontology.org/"
} ],
"version" : "http://purl.obolibrary.org/obo/envo/releases/2024-02-05/envo.json"
"version" : "http://purl.obolibrary.org/obo/envo/releases/2024-02-16/envo.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/ENVO_01001569",
Expand Down Expand Up @@ -81301,7 +81301,7 @@
"val" : "https://orcid.org/0000-0002-5004-3362"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2023-08-25T:17:42.901Z"
"val" : "2023-08-25T12:17:42.901Z"
} ]
}
}, {
Expand All @@ -81322,7 +81322,7 @@
"val" : "https://orcid.org/0000-0002-5004-3362"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2023-08-25T:17:42.901Z"
"val" : "2023-08-25T12:17:42.901Z"
} ]
}
}, {
Expand All @@ -81340,7 +81340,7 @@
"val" : "https://orcid.org/0000-0002-5004-3362"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2023-08-25T:17:42.901Z"
"val" : "2023-08-25T12:17:42.901Z"
} ]
}
}, {
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10 changes: 5 additions & 5 deletions envo.obo
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@@ -1,5 +1,5 @@
format-version: 1.2
data-version: releases/2024-02-05
data-version: releases/2024-02-16
subsetdef: disposition_slim "Disposition slim"
subsetdef: environmental_hazards "environmental_hazards"
subsetdef: EnvO-Lite-GSC "EnvO-Lite-GSC"
Expand Down Expand Up @@ -42,7 +42,7 @@ property_value: http://purl.org/dc/elements/1.1/description "ENVO is an ontology
property_value: http://purl.org/dc/elements/1.1/title "The Environment Ontology" xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
property_value: http://xmlns.com/foaf/0.1/homepage "http://environmentontology.org/" xsd:anyURI
property_value: owl:versionInfo "2024-02-05" xsd:string
property_value: owl:versionInfo "2024-02-16" xsd:string

[Term]
id: BFO:0000001
Expand Down Expand Up @@ -44428,7 +44428,7 @@ is_a: ENVO:00000063 ! water body
is_a: ENVO:01001308 ! hydroform
relationship: BFO:0000050 ENVO:00000023 ! part of stream
created_by: https://orcid.org/0000-0002-5004-3362
creation_date: 2023-08-25T:17:42.901Z
creation_date: 2023-08-25T12:17:42.901Z

[Term]
id: ENVO:03600095
Expand All @@ -44438,7 +44438,7 @@ synonym: "run" BROAD []
is_a: ENVO:01001308 ! hydroform
relationship: BFO:0000050 ENVO:00000023 ! part of stream
created_by: https://orcid.org/0000-0002-5004-3362
creation_date: 2023-08-25T:17:42.901Z
creation_date: 2023-08-25T12:17:42.901Z

[Term]
id: ENVO:03600096
Expand All @@ -44447,7 +44447,7 @@ def: "A stream pool which is formed as a result of high-gradient, steep streams
comment: Due to the gradient and surrounding geology, this pattern continues down the stream: step (drop), pool, step, pool, etc.
is_a: ENVO:03600094 ! stream pool
created_by: https://orcid.org/0000-0002-5004-3362
creation_date: 2023-08-25T:17:42.901Z
creation_date: 2023-08-25T12:17:42.901Z

[Term]
id: ENVO:03605000
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10 changes: 5 additions & 5 deletions envo.owl
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Expand Up @@ -23,7 +23,7 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:process_attribute="http://purl.obolibrary.org/obo/envo-p/patterns/process_attribute/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/envo/releases/2024-02-05/envo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/envo/releases/2024-02-16/envo.owl"/>
<dc:contributor rdf:resource="https://orcid.org/0000-0002-2996-719X"/>
<dc:creator rdf:resource="https://orcid.org/0000-0002-4366-3088"/>
<dc:creator>http://orcid.org/0000-0002-6601-2165</dc:creator>
Expand All @@ -40,7 +40,7 @@
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute_location.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 168 Logical Axioms: 29]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_quality_location.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 40 Logical Axioms: 6]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 21 Logical Axioms: 2]</rdfs:comment>
<owl:versionInfo>2024-02-05</owl:versionInfo>
<owl:versionInfo>2024-02-16</owl:versionInfo>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://environmentontology.org/</foaf:homepage>
</owl:Ontology>

Expand Down Expand Up @@ -121530,7 +121530,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A water body which is created in a stream by local scour or impoundment and has some structural control.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:hasBroadSynonym xml:lang="en">pool</oboInOwl:hasBroadSynonym>
<rdfs:comment xml:lang="en">Pool water depth is above average for the stream. If if all the running water in the stream was shut off, areas in the stream that still hold water are pools. Pool water velocity is below average for the reach, causing fine sediments to deposit in pools. Pools are generally longer than they are wide (unless they are plunge pools), and are 1.5 x deeper at their maximum depth than they are at their crest</rdfs:comment>
<rdfs:label xml:lang="en">stream pool</rdfs:label>
Expand All @@ -121556,7 +121556,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A hydroform which is that part of a stream where water flows swiftly and uniformly with low surface water agitation.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:hasBroadSynonym xml:lang="en">run</oboInOwl:hasBroadSynonym>
<rdfs:label xml:lang="en">stream run</rdfs:label>
</owl:Class>
Expand All @@ -121575,7 +121575,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_03600094"/>
<obo:IAO_0000115 xml:lang="en">A stream pool which is formed as a result of high-gradient, steep streams where water cascades over a rock or woody snag.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<rdfs:comment xml:lang="en">Due to the gradient and surrounding geology, this pattern continues down the stream: step (drop), pool, step, pool, etc.</rdfs:comment>
<rdfs:label xml:lang="en">step pool</rdfs:label>
</owl:Class>
Expand Down
10 changes: 5 additions & 5 deletions src/envo/envo-simple.owl
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Expand Up @@ -16,7 +16,7 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:process_attribute="http://purl.obolibrary.org/obo/envo-p/patterns/process_attribute/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo/envo-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/envo/releases/2024-02-05/envo-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/envo/releases/2024-02-16/envo-base.owl"/>
<dc:contributor rdf:resource="https://orcid.org/0000-0002-2996-719X"/>
<dc:creator rdf:resource="https://orcid.org/0000-0002-4366-3088"/>
<dc:creator>http://orcid.org/0000-0002-6601-2165</dc:creator>
Expand All @@ -34,7 +34,7 @@
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute_location.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 168 Logical Axioms: 29]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_quality_location.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 40 Logical Axioms: 6]</rdfs:comment>
<rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 21 Logical Axioms: 2]</rdfs:comment>
<owl:versionInfo>2024-02-05</owl:versionInfo>
<owl:versionInfo>2024-02-16</owl:versionInfo>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://environmentontology.org/</foaf:homepage>
</owl:Ontology>

Expand Down Expand Up @@ -108643,7 +108643,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A water body which is created in a stream by local scour or impoundment and has some structural control.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:hasBroadSynonym xml:lang="en">pool</oboInOwl:hasBroadSynonym>
<rdfs:comment xml:lang="en">Pool water depth is above average for the stream. If if all the running water in the stream was shut off, areas in the stream that still hold water are pools. Pool water velocity is below average for the reach, causing fine sediments to deposit in pools. Pools are generally longer than they are wide (unless they are plunge pools), and are 1.5 x deeper at their maximum depth than they are at their crest</rdfs:comment>
<rdfs:label xml:lang="en">stream pool</rdfs:label>
Expand All @@ -108669,7 +108669,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A hydroform which is that part of a stream where water flows swiftly and uniformly with low surface water agitation.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:hasBroadSynonym xml:lang="en">run</oboInOwl:hasBroadSynonym>
<rdfs:label xml:lang="en">stream run</rdfs:label>
</owl:Class>
Expand All @@ -108694,7 +108694,7 @@ consider revising &apos;pond&apos; semantics</obo:IAO_0000116>
</rdfs:subClassOf>
<obo:IAO_0000115 xml:lang="en">A stream pool which is formed as a result of high-gradient, steep streams where water cascades over a rock or woody snag.</obo:IAO_0000115>
<oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-5004-3362"/>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T:17:42.901Z</oboInOwl:creation_date>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2023-08-25T12:17:42.901Z</oboInOwl:creation_date>
<rdfs:comment xml:lang="en">Due to the gradient and surrounding geology, this pattern continues down the stream: step (drop), pool, step, pool, etc.</rdfs:comment>
<rdfs:label xml:lang="en">step pool</rdfs:label>
</owl:Class>
Expand Down
10 changes: 5 additions & 5 deletions src/envo/envo.json
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Original file line number Diff line number Diff line change
Expand Up @@ -52,12 +52,12 @@
"val" : "Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl>) VersionIRI(<null>))) [Axioms: 21 Logical Axioms: 2]"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2024-02-05"
"val" : "2024-02-16"
}, {
"pred" : "http://xmlns.com/foaf/0.1/homepage",
"val" : "http://environmentontology.org/"
} ],
"version" : "http://purl.obolibrary.org/obo/envo/releases/2024-02-05/envo.json"
"version" : "http://purl.obolibrary.org/obo/envo/releases/2024-02-16/envo.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/ENVO_01001569",
Expand Down Expand Up @@ -81301,7 +81301,7 @@
"val" : "https://orcid.org/0000-0002-5004-3362"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2023-08-25T:17:42.901Z"
"val" : "2023-08-25T12:17:42.901Z"
} ]
}
}, {
Expand All @@ -81322,7 +81322,7 @@
"val" : "https://orcid.org/0000-0002-5004-3362"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2023-08-25T:17:42.901Z"
"val" : "2023-08-25T12:17:42.901Z"
} ]
}
}, {
Expand All @@ -81340,7 +81340,7 @@
"val" : "https://orcid.org/0000-0002-5004-3362"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2023-08-25T:17:42.901Z"
"val" : "2023-08-25T12:17:42.901Z"
} ]
}
}, {
Expand Down
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