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EpiDiverse

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  1. snp snp Public

    The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow

    Python 10 4

  2. wgbs wgbs Public

    The EpiDiverse Whole Genome Bisulfite Sequencing Pipeline, implemented with Nextflow

    Nextflow 7 1

  3. ewas ewas Public

    The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow

    Nextflow 6

  4. dmr dmr Public

    The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow

    Nextflow 3

  5. scripts scripts Public

    Scripts for several purposes such as filtering, subsetting, extracting contexts, etc

    R 1

  6. epiGBS2 epiGBS2 Public

    Forked from nioo-knaw/epiGBS2

    FIND THE OFFICIAL RELEASE HERE: https://github.com/nioo-knaw/epiGBS2

    Python 1

Repositories

Showing 8 of 8 repositories
  • ewas Public

    The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow

    EpiDiverse/ewas’s past year of commit activity
    Nextflow 6 MIT 0 2 0 Updated Feb 28, 2023
  • scripts Public

    Scripts for several purposes such as filtering, subsetting, extracting contexts, etc

    EpiDiverse/scripts’s past year of commit activity
    R 1 0 0 0 Updated Oct 13, 2022
  • snp Public

    The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow

    EpiDiverse/snp’s past year of commit activity
    Python 10 MIT 4 1 0 Updated Jul 23, 2022
  • wgbs Public

    The EpiDiverse Whole Genome Bisulfite Sequencing Pipeline, implemented with Nextflow

    EpiDiverse/wgbs’s past year of commit activity
    Nextflow 7 MIT 1 7 0 Updated Jul 19, 2022
  • MethylScore Public Forked from Computomics/MethylScore

    Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calling

    EpiDiverse/MethylScore’s past year of commit activity
    Perl 0 3 0 0 Updated Oct 22, 2021
  • dmr Public

    The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow

    EpiDiverse/dmr’s past year of commit activity
    Nextflow 3 MIT 0 2 0 Updated Sep 23, 2021
  • datasets Public

    Test datasets for EpiDiverse pipelines

    EpiDiverse/datasets’s past year of commit activity
    0 MIT 0 0 0 Updated Jul 20, 2021
  • epiGBS2 Public Forked from nioo-knaw/epiGBS2

    FIND THE OFFICIAL RELEASE HERE: https://github.com/nioo-knaw/epiGBS2

    EpiDiverse/epiGBS2’s past year of commit activity
    Python 1 MIT 6 0 0 Updated Mar 19, 2020

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