chore: update naming convention

lang/en/docs/tutorials/overview.md

@@ -77,3 +77,28 @@ sidebar navigation.
     - [Interface, no strain minimization (Python Transformation)](materials/interface-with-python.md)
     - [Interface, minimal strain (JupyterLite Session)](materials/jupyterlite-zsl.md)
     - [Import materials from files in various formats](materials/import-from-files.md)
+
+- Reproducing Specific Manuscripts:
+    - [Substitutional Point Defects in Graphene](materials/specific/defect-point-substitution-graphene.md)
+    - [Vacancy-Substitution Pair Defects in GaN](materials/specific/defect-point-pair-gallium-nitride.md)
+    - [Vacancy Point Defect in h-BN](materials/specific/defect-point-vacancy-boron-nitride.md)
+    - [Interstitial Point Defect in SnO](materials/specific/defect-point-interstitial-tin-oxide.md)
+    - [Island Surface Defect Formation in TiN](materials/specific/defect-surface-island-titanium-nitride.md)
+    - [Step Surface Defect on Pt(111)](materials/specific/defect-surface-step-platinum.md)
+    - [Twisted Bilayer h-BN nanoribbons](materials/specific/interface-bilayer-twisted-nanoribbons-boron-nitride.md)
+    - [Twisted Bilayer MoS2 commensurate lattices](materials/specific/interface-bilayer-twisted-commensurate-lattices-molybdenum-disulfide.md)
+    - [Adatom Surface Defects on Graphene](materials/specific/defect-surface-adatom-graphene.md)
+    - [H-Passivated Silicon Nanowire](materials/specific/passivation-edge-nanowire-silicon.md)
+    - [H-Passivated Silicon (100) Surface](materials/specific/passivation-surface-silicon.md)
+    - [Gold Nanoclusters](materials/specific/nanocluster-gold.md)
+    - [SrTiO3 Slab](materials/specific/slab-strontium-titanate.md)
+    - [Interface between Graphene and h-BN](materials/specific/interface-2d-2d-graphene-boron-nitride.md)
+    - [Interface between Copper and SiO2 (Cristobalite)](materials/specific/interface-3d-3d-copper-silicon-dioxide.md)
+    - [Interface between Graphene and SiO2 (alpha-quartz)](materials/specific/interface-2d-3d-graphene-silicon-dioxide.md)
+    - [High-k Metal Gate Stack (Si/SiO2/HfO2/TiN)](materials/specific/heterostructure-silicon-silicon-dioxide-hafnium-dioxide-titanium-nitride.md)
+    - [Ripple perturbation of a Graphene sheet](materials/specific/perturbation-ripples-graphene.md)
+    - [Grain Boundary in FCC Metals (Copper)](materials/specific/defect-planar-grain-boundary-3d-fcc-metals-copper.md)
+    - [Grain Boundary (2D) in h-BN](materials/specific/defect-planar-grain-boundary-2d-boron-nitride.md)
+    - [Gr/Ni(111) Interface Optimization](materials/specific/optimization-interface-film-xy-position-graphene-nickel.md)
+    - [Pt Adatoms Island on MoS2](materials/specific/defect-point-adatom-island-molybdenum-disulfide-platinum.md)
+

mkdocs.yml

@@ -223,7 +223,7 @@ nav:
             - Interface, minimal strain (JupyterLite Session):                  tutorials/materials/jupyterlite-zsl.md
             - Import materials from files in various formats:                   tutorials/materials/import-from-files.md
 
-        - Publication Reproductions:
+        - Reproducing Specific Manuscripts:
             - Substitutional Point Defects in Graphene:                     tutorials/materials/specific/defect-point-substitution-graphene.md
             - Vacancy-Substitution Pair Defects in GaN:                     tutorials/materials/specific/defect-point-pair-gallium-nitride.md
             - Vacancy Point Defect in h-BN:                                 tutorials/materials/specific/defect-point-vacancy-boron-nitride.md