update: rename to reflect categories

Exabyte-io · Jan 6, 2025 · 4df49e9 · 4df49e9
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diff --git a/...ecific/grain-boundary-2d-boron-nitride.md → ...planar-grain-boundary-2d-boron-nitride.md b/...ecific/grain-boundary-2d-boron-nitride.md → ...planar-grain-boundary-2d-boron-nitride.md
@@ -142,7 +142,7 @@ The following JupyterLite notebook demonstrates the complete process. Select "Ru
 
 {% with origin_url=config.extra.jupyterlite.origin_url %}
 {% with notebooks_path_root=config.extra.jupyterlite.notebooks_path_root %}
-{% with notebook_name='specific_examples/grain_boundary_2d_boron_nitride.ipynb' %}
+{% with notebook_name='specific_examples/defect_planar_grain_boundary_2d_boron_nitride.ipynb' %}
 {% include 'jupyterlite_embed.html' %}
 {% endwith %}
 {% endwith %}

diff --git a/...ic/grain-boundary-3d-fcc-metals-copper.md → ...ar-grain-boundary-3d-fcc-metals-copper.md b/...ic/grain-boundary-3d-fcc-metals-copper.md → ...ar-grain-boundary-3d-fcc-metals-copper.md
@@ -138,7 +138,7 @@ The following JupyterLite notebook demonstrates the complete process. Select "Ru
 
 {% with origin_url=config.extra.jupyterlite.origin_url %}
 {% with notebooks_path_root=config.extra.jupyterlite.notebooks_path_root %}
-{% with notebook_name='specific_examples/grain_boundary_3d_fcc_metals_copper.ipynb' %}
+{% with notebook_name='specific_examples/defect_planar_grain_boundary_3d_fcc_metals_copper.ipynb' %}
 {% include 'jupyterlite_embed.html' %}
 {% endwith %}
 {% endwith %}

diff --git a/...fic/defect_point_adatom_island_mos2_pt.md → ...m-island-molybdenum-disulfide-platinum.md b/...fic/defect_point_adatom_island_mos2_pt.md → ...m-island-molybdenum-disulfide-platinum.md
@@ -158,7 +158,7 @@ The following embedded notebook demonstrates the complete process. Select "Run"
 
 {% with origin_url=config.extra.jupyterlite.origin_url %}
 {% with notebooks_path_root=config.extra.jupyterlite.notebooks_path_root %}
-{% with notebook_name='specific_examples/defect_point_adatom_island_mos2_pt.ipynb' %}
+{% with notebook_name='specific_examples/defect_point_adatom_island_molybdenum_disulfide_platinum.ipynb' %}
 {% include 'jupyterlite_embed.html' %}
 {% endwith %}
 {% endwith %}

diff --git a/...fic/heterostructure-silicon-silicon-dioxide-hafnium-dioxide-titanium-nitride.md b/...fic/heterostructure-silicon-silicon-dioxide-hafnium-dioxide-titanium-nitride.md
@@ -199,7 +199,7 @@ The following JupyterLite notebook demonstrates the process of creating target m
 
 {% with origin_url=config.extra.jupyterlite.origin_url %}
 {% with notebooks_path_root=config.extra.jupyterlite.notebooks_path_root %}
-{% with notebook_name='specific_examples/heterostructure_high_k_metal_gate_stack.ipynb' %}
+{% with notebook_name='specific_examples/heterostructure_silicon_silicon_dioxide_hafnium_dioxide_titanium_nitride.ipynb' %}
 {% include 'jupyterlite_embed.html' %}
 {% endwith %}
 {% endwith %}

diff --git a/...ilm-position-graphene-nickel-interface.md → ...rface-film-xy-position-graphene-nickel.md b/...ilm-position-graphene-nickel-interface.md → ...rface-film-xy-position-graphene-nickel.md
@@ -140,7 +140,7 @@ The following JupyterLite notebook demonstrates the complete process. Select "Ru
 
 {% with origin_url=config.extra.jupyterlite.origin_url %}
 {% with notebooks_path_root=config.extra.jupyterlite.notebooks_path_root %}
-{% with notebook_name='specific_examples/optimize_film_position_graphene_nickel_interface.ipynb' %}
+{% with notebook_name='specific_examples/optimization_interface_film_xy_position_graphene_nickel.ipynb' %}
 {% include 'jupyterlite_embed.html' %}
 {% endwith %}
 {% endwith %}

diff --git a/mkdocs.yml b/mkdocs.yml
@@ -224,28 +224,28 @@ nav:
             - Import materials from files in various formats:                   tutorials/materials/import-from-files.md
 
             - Specific:
-                - Substitutional Point Defects in Graphene:                   tutorials/materials/specific/defect-point-substitution-graphene.md
-                - Vacancy-Substitution Pair Defects in GaN:                   tutorials/materials/specific/defect-point-pair-gallium-nitride.md
-                - Vacancy Point Defect in h-BN:                                       tutorials/materials/specific/defect-point-vacancy-boron-nitride.md
-                - Interstitial Point Defect in SnO:                                    tutorials/materials/specific/defect-point-interstitial-tin-oxide.md
-                - Island Surface Defect Formation in TiN:                     tutorials/materials/specific/defect-surface-island-titanium-nitride.md
-                - Step Surface Defect on Pt(111):                              tutorials/materials/specific/defect-surface-step-platinum.md
-                - Twisted Bilayer h-BN nanoribbons:                       tutorials/materials/specific/interface-bilayer-twisted-nanoribbons-boron-nitride.md
-                - Twisted Bilayer MoS2 commensurate lattices:                tutorials/materials/specific/interface-bilayer-twisted-commensurate-lattices-molybdenum-disulfide.md
-                - Adatom Surface Defects on Graphene:                          tutorials/materials/specific/defect-surface-adatom-graphene.md
-                - H-Passivated Silicon Nanowire:                                      tutorials/materials/specific/passivation-edge-silicon-nanowire.md
+                - Substitutional Point Defects in Graphene:                     tutorials/materials/specific/defect-point-substitution-graphene.md
+                - Vacancy-Substitution Pair Defects in GaN:                     tutorials/materials/specific/defect-point-pair-gallium-nitride.md
+                - Vacancy Point Defect in h-BN:                                 tutorials/materials/specific/defect-point-vacancy-boron-nitride.md
+                - Interstitial Point Defect in SnO:                             tutorials/materials/specific/defect-point-interstitial-tin-oxide.md
+                - Island Surface Defect Formation in TiN:                       tutorials/materials/specific/defect-surface-island-titanium-nitride.md
+                - Step Surface Defect on Pt(111):                               tutorials/materials/specific/defect-surface-step-platinum.md
+                - Twisted Bilayer h-BN nanoribbons:                             tutorials/materials/specific/interface-bilayer-twisted-nanoribbons-boron-nitride.md
+                - Twisted Bilayer MoS2 commensurate lattices:                   tutorials/materials/specific/interface-bilayer-twisted-commensurate-lattices-molybdenum-disulfide.md
+                - Adatom Surface Defects on Graphene:                           tutorials/materials/specific/defect-surface-adatom-graphene.md
+                - H-Passivated Silicon Nanowire:                                tutorials/materials/specific/passivation-edge-silicon-nanowire.md
                 - H-Passivated Silicon (100) Surface:                           tutorials/materials/specific/passivation-surface-silicon-surface.md
-                - Gold Nanoclusters:                                             tutorials/materials/specific/nanocluster-gold.md
+                - Gold Nanoclusters:                                            tutorials/materials/specific/nanocluster-gold.md
                 - SrTiO3 Slab:                                                  tutorials/materials/specific/slab-strontium-titanate.md
                 - Interface between Graphene and h-BN:                          tutorials/materials/specific/interface-2d-2d-graphene-boron-nitride.md
-                - Interface between Copper and SiO2 (Cristobalite):                  tutorials/materials/specific/interface-3d-3d-copper-silicon-dioxide.md
-                - Interface between Graphene and SiO2 (alpha-quartz):                tutorials/materials/specific/interface-2d-3d-graphene-silicon-dioxide.md
-                - High-k Metal Gate Stack (Si/SiO2/HfO2/TiN):                        tutorials/materials/specific/heterostructure-silicon-silicon-dioxide-hafnium-dioxide-titanium-nitride.md
-                - Ripple perturbation of a Graphene sheet:                               tutorials/materials/specific/perturbation-ripples-graphene.md
-                - Grain Boundary in FCC Metals (Copper):                                tutorials/materials/specific/grain-boundary-3d-fcc-metals-copper.md
-                - Grain Boundary (2D) in h-BN:                                   tutorials/materials/specific/grain-boundary-2d-boron-nitride.md
-                - Gr/Ni(111) Interface Optimization:                                     tutorials/materials/specific/optimize-film-position-graphene-nickel-interface.md
-                - Pt Adatoms Island on MoS2:                                    tutorials/materials/specific/defect_point_adatom_island_mos2_pt.md
+                - Interface between Copper and SiO2 (Cristobalite):             tutorials/materials/specific/interface-3d-3d-copper-silicon-dioxide.md
+                - Interface between Graphene and SiO2 (alpha-quartz):           tutorials/materials/specific/interface-2d-3d-graphene-silicon-dioxide.md
+                - High-k Metal Gate Stack (Si/SiO2/HfO2/TiN):                   tutorials/materials/specific/heterostructure-silicon-silicon-dioxide-hafnium-dioxide-titanium-nitride.md
+                - Ripple perturbation of a Graphene sheet:                      tutorials/materials/specific/perturbation-ripples-graphene.md
+                - Grain Boundary in FCC Metals (Copper):                        tutorials/materials/specific/defect-planar-grain-boundary-3d-fcc-metals-copper.md
+                - Grain Boundary (2D) in h-BN:                                  tutorials/materials/specific/defect-planar-grain-boundary-2d-boron-nitride.md
+                - Gr/Ni(111) Interface Optimization:                            tutorials/materials/specific/optimization-interface-film-xy-position-graphene-nickel-interface.md
+                - Pt Adatoms Island on MoS2:                                    tutorials/materials/specific/defect-point-adatom-island-molybdenum-disulfide-platinum.md
 
 # COMMON UI COMPONENTS
     - Interface Components: