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Mapping JERM to PROV-O #4

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Mapping JERM to PROV-O #4

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85 changes: 84 additions & 1 deletion JERM.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,10 @@
<Prefix name="rdf" IRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
<Prefix name="xml" IRI="http://www.w3.org/XML/1998/namespace"/>
<Prefix name="xsd" IRI="http://www.w3.org/2001/XMLSchema#"/>
<Prefix name="foaf" IRI="http://xmlns.com/foaf/0.1/"/>
<Prefix name="prov" IRI="http://www.w3.org/ns/prov#"/>
<Prefix name="rdfs" IRI="http://www.w3.org/2000/01/rdf-schema#"/>
<Prefix name="schema" IRI="http://schema.org/"/>
<Prefix name="owl2xml" IRI="http://www.w3.org/2006/12/owl2-xml#"/>
<Prefix name="JERMOntology" IRI="http://jermontology.org/ontology/JERMOntology#"/>
<Prefix name="JERMOntology2" IRI="http://jermontology.org/ontology/JERMOntology#13"/>
Expand Down Expand Up @@ -141,6 +144,9 @@
<Declaration>
<Class IRI="#Functional_biological_entity"/>
</Declaration>
<Declaration>
<Class abbreviatedIRI="prov:Entity"/>
</Declaration>
<Declaration>
<Class IRI="#Project"/>
</Declaration>
Expand Down Expand Up @@ -303,6 +309,9 @@
<Declaration>
<ObjectProperty IRI="#isInvestigatedBy"/>
</Declaration>
<Declaration>
<ObjectProperty abbreviatedIRI="prov:wasAttributedTo"/>
</Declaration>
<Declaration>
<DataProperty IRI="#DOI"/>
</Declaration>
Expand Down Expand Up @@ -606,6 +615,9 @@
<Declaration>
<Class IRI="#qPCR"/>
</Declaration>
<Declaration>
<ObjectProperty abbreviatedIRI="prov:wasDerivedFrom"/>
</Declaration>
<Declaration>
<Class IRI="#Pressure"/>
</Declaration>
Expand Down Expand Up @@ -696,6 +708,9 @@
<Declaration>
<Class IRI="#Investigation"/>
</Declaration>
<Declaration>
<Class abbreviatedIRI="prov:Activity"/>
</Declaration>
<Declaration>
<Class IRI="#Single_cell"/>
</Declaration>
Expand Down Expand Up @@ -945,6 +960,9 @@
<Declaration>
<Class IRI="#UPLC"/>
</Declaration>
<Declaration>
<ObjectProperty abbreviatedIRI="prov:wasInfluencedBy"/>
</Declaration>
<Declaration>
<Class IRI="#phenotype"/>
</Declaration>
Expand Down Expand Up @@ -1050,6 +1068,9 @@
<Declaration>
<Class IRI="#Nature_protocols"/>
</Declaration>
<Declaration>
<Class abbreviatedIRI="prov:Person"/>
</Declaration>
<EquivalentClasses>
<Class IRI="#Methylation_profiling"/>
<ObjectSomeValuesFrom>
Expand Down Expand Up @@ -1642,6 +1663,10 @@
<Class IRI="#Inductively_coupled_plasma_mass_spectrometry"/>
<Class IRI="#Mass_spectrometry"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#Information_entity"/>
<Class abbreviatedIRI="prov:Entity"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#Initial_rate_experiment"/>
<Class IRI="#Enzymatic_activity_measurements"/>
Expand Down Expand Up @@ -1759,6 +1784,10 @@
<Class IRI="#Mass_spectrometry"/>
<Class IRI="#Technology_type"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#Material_entity"/>
<Class abbreviatedIRI="prov:Entity"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#Mathematical_model_type"/>
<Class IRI="#Technology_type"/>
Expand Down Expand Up @@ -1961,6 +1990,10 @@
<Class IRI="#Person"/>
<Class IRI="#Material_entity"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#Person"/>
<Class abbreviatedIRI="prov:Person"/>
</SubClassOf>
<SubClassOf>
<Class IRI="#Person"/>
<ObjectSomeValuesFrom>
Expand Down Expand Up @@ -2914,6 +2947,18 @@
<Class IRI="#Organism"/>
<Class IRI="#Protein"/>
</DisjointClasses>
<DisjointClasses>
<Class abbreviatedIRI="prov:Activity"/>
<Class abbreviatedIRI="prov:Entity"/>
</DisjointClasses>
<EquivalentObjectProperties>
<ObjectProperty IRI="#isDerivedFrom"/>
<ObjectProperty abbreviatedIRI="prov:wasDerivedFrom"/>
</EquivalentObjectProperties>
<SubObjectPropertyOf>
<ObjectProperty IRI="#hasContributor"/>
<ObjectProperty abbreviatedIRI="prov:wasAttributedTo"/>
</SubObjectPropertyOf>
<SubObjectPropertyOf>
<ObjectProperty IRI="#hasCreator"/>
<ObjectProperty IRI="#hasContributor"/>
Expand All @@ -2922,6 +2967,14 @@
<ObjectProperty IRI="#isCreatorOf"/>
<ObjectProperty IRI="#isContributorOf"/>
</SubObjectPropertyOf>
<SubObjectPropertyOf>
<ObjectProperty abbreviatedIRI="prov:wasAttributedTo"/>
<ObjectProperty abbreviatedIRI="prov:wasInfluencedBy"/>
</SubObjectPropertyOf>
<SubObjectPropertyOf>
<ObjectProperty abbreviatedIRI="prov:wasDerivedFrom"/>
<ObjectProperty abbreviatedIRI="prov:wasInfluencedBy"/>
</SubObjectPropertyOf>
<InverseObjectProperties>
<ObjectProperty IRI="#hasContributor"/>
<ObjectProperty IRI="#isContributorOf"/>
Expand Down Expand Up @@ -5005,7 +5058,7 @@ Liquid chromatography (LC) is a separation technique in which the mobile phase i
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="dc:description"/>
<IRI>#Person</IRI>
<Literal datatypeIRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral">a SEEK consortium member</Literal>
<Literal datatypeIRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral">A Person who is associated with a SEEK project</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="dc:identifier"/>
Expand Down Expand Up @@ -6394,6 +6447,36 @@ Liquid chromatography (LC) is a separation technique in which the mobile phase i
<IRI>#Sex/Gender</IRI>
<Literal datatypeIRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#PlainLiteral">Sex / Gender</Literal>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
<AbbreviatedIRI>prov:Activity</AbbreviatedIRI>
<IRI>http://www.w3.org/ns/prov-o#</IRI>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
<AbbreviatedIRI>prov:Entity</AbbreviatedIRI>
<IRI>http://www.w3.org/ns/prov-o#</IRI>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
<AbbreviatedIRI>prov:Person</AbbreviatedIRI>
<IRI>http://www.w3.org/ns/prov-o#</IRI>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
<AbbreviatedIRI>prov:wasAttributedTo</AbbreviatedIRI>
<IRI>http://www.w3.org/ns/prov-o#</IRI>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
<AbbreviatedIRI>prov:wasDerivedFrom</AbbreviatedIRI>
<IRI>http://www.w3.org/ns/prov-o#</IRI>
</AnnotationAssertion>
<AnnotationAssertion>
<AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
<AbbreviatedIRI>prov:wasInfluencedBy</AbbreviatedIRI>
<IRI>http://www.w3.org/ns/prov-o#</IRI>
</AnnotationAssertion>
</Ontology>


Expand Down