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Some SUSIE .cred files have bad headers #28

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Lipastomies opened this issue Oct 8, 2020 · 3 comments
Open

Some SUSIE .cred files have bad headers #28

Lipastomies opened this issue Oct 8, 2020 · 3 comments
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@Lipastomies
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Lipastomies commented Oct 8, 2020 •
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Some outputted .SUSIE.cred.gz-files have only the first two column names ("trait", "region") in the header.
See e.g. gs://finngen-production-library-green/finngen_R5/finngen_R5_analysis_data/finemap/1/AB1_AMOEBIASIS.SUSIE.cred.bgz
@Lipastomies Lipastomies added the bug Something isn't working label Oct 8, 2020
@juhis
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juhis commented Oct 15, 2020

Not anymore

@juhis juhis closed this as completed Oct 15, 2020
@Lipastomies
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Same problem, this time with R6 data.
Affected files:

gs://finngen-production-library-green/finngen_R6/finngen_R6_analysis_data/finemap/full/ARTRHO_POSTDYSENTERIC.SUSIE.cred.bgz
gs://finngen-production-library-green/finngen_R6/finngen_R6_analysis_data/finemap/full/M13_CALCANSPUR.SUSIE.cred.bgz

@Lipastomies Lipastomies reopened this Oct 22, 2020
@Lipastomies
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Fixed those files

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@juhis @Lipastomies