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23 Open 13 Closed
23 Open 13 Closed
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Issues list

Make a parsing function for parsing the user_inputs.yaml function
#65 opened Feb 20, 2025 by FinbarArgus
Create a script that extracts parameters variables and automatically creates parameters.csv and module_config entries
#58 opened Jan 18, 2025 by FinbarArgus
For param id, allow different parameters to be calibrated for different experiments/subexperiments
#57 opened Dec 24, 2024 by FinbarArgus
Create a json schema for module_config.json and obs_data.json
#56 opened Nov 26, 2024 by FinbarArgus
Create checks in plot_param_id.sh (plot_param_id_script.py)
#55 opened Nov 26, 2024 by FinbarArgus
@FinbarArgus
Store the parameter ranges and priors in param_id_output, so we can look back and check.
#54 opened Nov 21, 2024 by FinbarArgus
Improve Tutorial
#53 opened Nov 13, 2024 by FinbarArgus
Improve tests for parameter identification.
#50 opened Oct 3, 2024 by FinbarArgus
1
cost_type should be set in obs_data.json for individual observables rather than in the user_inputs.yaml for all observables.
#48 opened Oct 2, 2024 by FinbarArgus
user_inputs.yaml should be able to be defined within a specific project file.
#47 opened Oct 2, 2024 by FinbarArgus
1
Error with multiple vessel segments and merge_junction_simple type in venous_svc
#46 opened Oct 1, 2024 by Jayakody148
@FinbarArgus
1
Create general_ports in the module_config that don't have to be specified as entrance or exit
#45 opened Sep 13, 2024 by FinbarArgus
segfault when only running one simulation (doing plotting)
#43 opened Aug 30, 2024 by FinbarArgus
There is a memory leak when accessing variables from OpenCOR
#41 opened Aug 23, 2024 by FinbarArgus
@FinbarArgus
1
Create functionality for supermodules, that can combine multiple modules and be used as a module itself in the vessel_array.csv
#40 opened Jul 22, 2024 by FinbarArgus
Include descriptions of each module
#39 opened Jul 11, 2024 by FinbarArgus
Include libcellml checks of maths and units in CellML generation with libcellml
#38 opened Mar 29, 2024 by FinbarArgus
@FinbarArgus
Some parameter sets freeze CVODE within OpenCOR, making a rank hang.
#35 opened Dec 3, 2023 by FinbarArgus
@FinbarArgus
1
Cpp model generation from the cellml models
#34 opened Nov 2, 2023 by FinbarArgus
@FinbarArgus
1
Include a convergence check
#26 opened Aug 24, 2022 by FinbarArgus
@scre583
1
param ID allow functionality for fitting one parameter which multiplies multiple other parameters.
#24 opened Jul 7, 2022 by FinbarArgus
module config has no corresponding documentation
#21 opened Jul 7, 2022 by FinbarArgus
1
There are no tests for the parameter id
#20 opened Jul 7, 2022 by FinbarArgus
2
ProTip! Exclude everything labeled bug with -label:bug.