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trigger o-server when running M21C; add replay input file to replay f…
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…rom M21C - an example
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@rtodling
rtodling committed Nov 7, 2024
1 parent e84fb98 commit c65ca5c
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Showing 5 changed files with 254 additions and 14 deletions.
22 changes: 14 additions & 8 deletions src/Applications/GEOSdas_App/fvsetup
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Original file line number Diff line number Diff line change
Expand Up @@ -351,6 +351,7 @@ use File::Path qw(mkpath rmtree);
use Getopt::Long qw(GetOptions);
use Sys::Hostname;
use Time::Local; # time functions
use POSIX qw(ceil);

use FindBin; # so we can find where this script resides
use lib ("$FindBin::Bin", "$ESMADIR/$ARCH/bin");
Expand Down Expand Up @@ -3232,8 +3233,8 @@ sub get_times {
# # ----
if ($res eq "C48") { $nx = 4; $ny = 24 } # (b) 96
elsif ($res eq "C90") { $nx = 4; $ny = 24 } # (c) 96
elsif ($res eq "C180") { $nx = 15; $ny = 36 } # (d) 360
elsif ($res eq "C360") { $nx = 8; $ny = 48 } # (e) 384
elsif ($res eq "C180") { $nx = 9; $ny = 30 } # (d) 270
elsif ($res eq "C360") { $nx = 10; $ny = 36 } # (e) 360
else { $nx = 28; $ny = 48 } # (f+) 1344
}
else {
Expand Down Expand Up @@ -4872,7 +4873,6 @@ EOF
$use_shmem = 0;
$o_servers = 0;
$bckend_wrts = 0;
$ios_nds = 1;
$cldmicro = "1MOMENT";
if ( "$res" eq "c" && "$vres" eq "55" ) {
$anahgrd = substr($res,0,1);
Expand Down Expand Up @@ -5167,7 +5167,6 @@ EOF
$bckend_wrts = 24;
}
$cubed = 1;
# $ios_nds = 2;
$specres = "254";
$jcap = "254";
$agcm_grid_type = "Cubed-Sphere";
Expand Down Expand Up @@ -5201,8 +5200,11 @@ EOF
$ana_im_ens = 288;
$ana_jm_ens = 181;
} elsif ( "$res" eq "C360" ) { # Cubed-sphere
if ($r21c) {
$o_servers = 3;
$bckend_wrts = 24;
}
$cubed = 1;
# $ios_nds = 2;
$specres = "254";
$jcap = "254";
$agcm_grid_type = "Cubed-Sphere";
Expand Down Expand Up @@ -5276,7 +5278,6 @@ EOF
} elsif ( "$res" eq "C1440" ) { # Cubed-sphere
$cubed = 1;
$o_servers = 8;
# $ios_nds = 4;
$specres = "254";
$jcap = "254";
$agcm_grid_type = "Cubed-Sphere";
Expand Down Expand Up @@ -7789,7 +7790,8 @@ if ( $fvchem && $lm > 2 ) {
}
$pi = $i; # p for PSAS
my $xncpus = $ncpus + $o_servers * $ncpus_per_node;
my $this_many_nodes = ceil($ncpus/$ncpus_per_node) + $o_servers;
my $xncpus = $this_many_nodes * $ncpus_per_node;
# Turn off some parallelization on discover
#------------------------------------------
Expand Down Expand Up @@ -9887,7 +9889,11 @@ sub init_agcm_rc {
AGCM_label_subst("\@GRID_TYPE", $agcm_grid_type);
AGCM_label_subst("\@CUBE_AGCM", $cube_agcm);
AGCM_label_subst("\@LATLON_AGCM", $latlon_agcm);
AGCM_label_subst("\@NUM_OSERVER_NODES", $ios_nds);
if ( $o_servers > 0 ) {
AGCM_label_subst("\@NUM_OSERVER_NODES", $o_servers);
} else {
AGCM_label_subst("\@NUM_OSERVER_NODES", 1);
}
AGCM_label_subst("\@NUM_BACKEND_PES", $bckend_wrts);
AGCM_label_subst("\@AANA_IM", $ana_im);
Expand Down
4 changes: 2 additions & 2 deletions src/Applications/GEOSdas_App/testsuites/m21c_j98.input
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Expand Up @@ -98,10 +98,10 @@ Length of FORECAST run segments (in hours)? [123]
Number of one-day DAS segments per PBS job? [1]
>

Number of PEs in the zonal direction (NX)? [8]
Number of PEs in the zonal direction (NX)? [10]
>

Number of PEs in the meridional direction (NY)? [48]
Number of PEs in the meridional direction (NY)? [36]
>

Job nickname? [g5das]
Expand Down
234 changes: 234 additions & 0 deletions src/Applications/GEOSdas_App/testsuites/m21c_j98RPY.input
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@@ -0,0 +1,234 @@
#---------------
# m21c_j98RPY.input
#---------------

codeID: 271edc7
description: m21c_j98RPY__agrid_C360__ogrid_CS
fvsetupID:

---ENDHEADERS---

Remote account for Intranet plots? [rtodling@train]
>

Is this a MERRA2 (1), GEOSIT (2), R21C (3) experiment? [0]
> 3

AGCM Horizontal Resolution? [C360]
> C360

AGCM Vertical Resolution? [72]
>

OGCM Resolution? [C]
> CS

EXPID? [u000_C360]
> $expid

Check for previous use of expid (y/n)? [y]
> n

EXPDSC? [m21c_j98RPY__agrid_C360__ogrid_CS]
>

Land Boundary Conditions? [Icarus-NLv3]
>

Catchment Model choice? [1]
>

FVHOME? [/discover/nobackup/rtodling/m21c_j98RPY]
> /discover/nobackup/projects/gmao/dadev/rtodling/M21C/$expid

The directory /discover/nobackup/projects/gmao/dadev/rtodling/M21C/m21c_j98RPY does not exist. Create it now? [y]
>

Processing nodes (1:Haswell, 2:Skylake, 3:Cascase, 4:Milan)? [3]
> 4

Which case of variational analysis? [1]
>

Window of the variational analysis (min)? [360]
>

FVINPUT? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar]
>

REAL TIME BCS? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar/g5gcm/bcs/realtime/OSTIA_REYNOLDS]
>

agcmpert? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar/agcmpert]
>

chemistry? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar/chemistry]
>

g5chem? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar/g5chem]
>

g5gcm? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar/g5gcm]
>

PIESA? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar/PIESA]
>

MERRA2? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar/MERRA2]
>

AeroCom? [/discover/nobackup/projects/gmao/share/gmao_ops/fvInput_4dvar/AeroCom]
>

FVICS? [/archive/u/jstassi/restarts/GEOSadas-5_24_0]
> /home/dao_ops/e5303_m21c_jan98/run/.../archive/rs/Y1997/M12/e5303_m21c_jan98.rst.19971230_21z.tar

Run model-adjoint-related applications (0=no,1=yes)? [0]
> 0

Run analysis-sensitivity applications (0=no,1=yes)? [0]
>

Ending year-month-day? [20190119]
> 19980206

Length of FORECAST run segments (in hours)? [123]
>

Number of one-day DAS segments per PBS job? [1]
>

Number of PEs in the zonal direction (NX)? [10]
>

Number of PEs in the meridional direction (NY)? [36]
>

Job nickname? [g5das]
> m21cA

Run in split executable mode (1=yes;0=no)? [1]
>

Frequency of background fields (min)? [60]
>

Triangular spectral truncation? [254]
>

Analysis vertical levels (sig))? [72]
>

GSI grid resolution? [NA]
>

GEOS grid resolution instead? [d]
>

Ensemble Hybrid (<0;3=3dHyb;4=Hyb4d)? [4]
>

Number of procs in the zonal direction (NX)? [12]
>

Number of procs in the meridional direction (NY)? [20]
>

Which main class of ObsSys (1: NRT; 2: MERRA; 3: MERRA-2; 4: GEOS-IT; 5: R21C)? [5]
>

OBSERVING SYSTEM CLASSES?
> r21c_igra2_raob_pre-qc_bufr,r21c_cdas_conv_pre-qc_bufr,r21c_prof_pre-qc_bufr,r21c_avhrrwnd_pre-qc_bufr,r21c_nmodis_pre-qc_bufr,r21c_goes_pre-qc_prep_bufr,r21c_metsat_pre-qc_prep_bufr,r21c_jma_pre-qc_prep_bufr,r21c_ascat_pre-qc_bufr,r21c_repro_ers2_pre-qc_bufr,r21c_qscat_jpl_pre-qc_bufr,r21c_loon_bufr,r21c_gmao_mlst_bufr,r21c_prep_bufr,r21c_acftpfl_bufr,r21c_satwnd_bufr,r21c_avhrr_satwnd_bufr,r21c_ncep_tcvitals,r21c_tmi_bufr,r21c_gpsro_bufr,r21c_sevcsr_bufr,r21c_1bamua_bufr,r21c_1bamub_bufr,r21c_1bhrs2_bufr,r21c_1bhrs3_bufr,r21c_1bhrs4_bufr,r21c_1bmsu_bufr,r21c_1bmhs_bufr,r21c_1bssu_bufr,r21c_eosairs_bufr,r21c_eosamsua_bufr,r21c_mtiasi_bufr,r21c_atms_bufr,r21c_ssmit11_bufr,r21c_ssmit13_bufr,r21c_ssmit14_bufr,r21c_ssmit15_bufr,r21c_amsre_bufr,r21c_osbuv8_bufr,r21c_mls_nc,r21c_npp_ompslp_nc,r21c_aura_omieff_nc,r21c_npp_ompsnmeff_nc,r21c_avcsam_bufr,r21c_avcspm_bufr,r21c_amsr2_bufr,r21c_crisfsr_bufr,r21c_gmi_bufr,r21c_prep_bufr,r21c_acftpfl_bufr

CHECKING OBSYSTEM? [2]
> 1

Which RADCOR option? [HAIMB_HRAD]
>

Use sat channel-correlated observation errors (y/n)? [y]
>

Use aircraft bias correction (y/n)? [y]
>

Use unified radiance bias correction (y/n)? [y]
>

Land DAS Analysis (y/n)? [n]
>

Frequency (in days) for writing restarts? [0]
>

Frequency for PROGNOSTIC fields? [010000]
>

Frequency for surface (2D) DIAGNOSTIC fields? [010000]
>

Frequency for upper air (3D) DIAGNOSTIC fields? [030000]
>

Dimension of output in zonal direction? [1152]
>

Dimension of output in meridional direction? [721]
>

Would you like 2D diagnostics? [y]
>

Would you like 3D diagnostics? [y]
>

Would you like to compress diagnostics output files? [n]
>

Include GOCART tracers (CO,CO2,aerosols,etc) (y/n)? [y]
>

Select GOCART Emission Files to use: [AMIP]
>

Do Aerosol Analysis (y/n)? [y]
>

AOD OBSERVING CLASSES [or type 'none']?
> patmosx_ods,mod04_061_his,myd04_061_his,aeronet_obs

Enable GAAS feedback to model (y/n)? [y]
>

Which template? [HISTORY_R21C.rc.tmpl]
>

Which template? [GCMPROG.rc.tmpl]
>

Output Restart TYPE (bin or nc4) [nc4]
>

Select group: [g2538]
> g0613

Replayed Ensemble (from OPS)? [no]
> yes

Replay exp name? [x0046d]
> e5303_m21c_jan98

Replay archive directory? [/discover/nobackup/projects/gmao/dadev/rtodling/archive/x0046d]
> /gpfsm/dnb08/projects/p253/archive/e5303_m21c_jan98

Edit COLLECTIONS list in run/HISTORY.rc.tmpl (y/n)? [n]
>

Edit COLLECTIONS list in fcst/HISTORY.rc.tmpl (y/n)? [n]
>

Edit files in run directory for CERES configuration (y/n)? [n]
>

Which? [Q]
>
4 changes: 2 additions & 2 deletions src/Applications/GEOSdas_App/testsuites/x0048.input
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Expand Up @@ -44,8 +44,8 @@ FVHOME? [/discover/nobackup/dao_it/x0048]
The directory /discover/nobackup/projects/gmao/obsdev/dao_it/x0048 already exists. Clean it? [y]
>

Processing nodes (1:Westmere, 2:SandyBridge, 3:Ivy Bridge, 4:Haswell, 5:Skylake, 6:Cascase)? [4]
> 5
Processing nodes (1:Haswell, 2:Skylake, 3:Cascase, 4:Milan)? [4]
> 2

Which case of variational analysis? [1]
>
Expand Down
4 changes: 2 additions & 2 deletions src/Applications/GEOSdas_App/testsuites/x0048RPY.input
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Original file line number Diff line number Diff line change
Expand Up @@ -44,8 +44,8 @@ FVHOME? [/discover/nobackup/dao_it/x0048RPY]
The directory /discover/nobackup/projects/gmao/obsdev/dao_it/x0048RPY already exists. Clean it? [y]
>

Processing nodes (1:Westmere, 2:SandyBridge, 3:Ivy Bridge, 4:Haswell, 5:Skylake, 6:Cascase)? [4]
>
Processing nodes (1:Haswell, 2:Skylake, 3:Cascase, 4:Milan)? [4]
> 2

Which case of variational analysis? [1]
>
Expand Down

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