Releases · GEOS-ESM/MAPL

23 Dec 20:32

mathomp4

v2.47.1.3

2441070

MAPL 2.47.1.3

This is a tweak patch on top of MAPL 2.47.1.2. This adds the ability to add an option in AGCM.rc to allow MAPL to overwrite checkpoints:

overwrite_checkpoints: .true.

as requested in #3262.

By default, the capability is default .false which matches current MAPL behavior.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.13 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
  - gFTL 1.13.0
  - gFTL-shared 1.8.0
  - pFUnit 4.9.0 (optional)
  - fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From CHANGELOG.md

Changed

Added new option to AGCM.rc overwrite_checkpoint to allow checkpoint files to be overwritten. By default still will not overwrite checkpoints

Full Changelog: v2.47.1.2...v2.47.1.3

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19 Dec 14:00

mathomp4

v2.51.2

1c55973

MAPL 2.51.2 Latest

Latest

This patch release of MAPL 2.51 has a fix when using multiple rules for a vector item in ExtData2G. It also relaxes a restriction that vector regridding in ExtData2G must be bilinear.

This release also moves the CI and Docker to us Ubuntu 24-based base images. This also required a fix in one of the profiler unit tests.

All testing shows this to be zero-diff to v2.51.1

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
  - gFTL 1.14.0
  - gFTL-shared 1.9.0
  - pFUnit 4.10.0 (optional)
  - fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Changed

Removed restriction that vector regridding in ExtData2G must be bilinear
Update CI to use Ubuntu 24 images

Fixed

Fixed by when using multiple rules for a vector item in ExtData2G
Fix profiler ExclusiveColumn test for GCC 14

What's Changed

fixes #3255 by @bena-nasa in #3256

Full Changelog: v2.51.1...v2.51.2

Contributors

bena-nasa

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10 Dec 14:46

mathomp4

v2.51.1

c3d2046

MAPL 2.51.1

This is a patch on MAPL 2.51. This release fixes an issue where the per-cell counters in the generic coupler are not initialized properly. They are part of a derived type when gets allocated, but the pointers there are not initialized to NULL.

Testing of GEOS at c24 and c360 shows this to be zero-diff. However, there is the possibility that if you encountered this bug, some output could change.

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
  - gFTL 1.14.0
  - gFTL-shared 1.9.0
  - pFUnit 4.10.0 (optional)
  - fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Fixed

Properly nullified the pointers to the per-grid-cell counters

What's Changed

Fixes #3232. Properly initialized per-cell counters by @atrayano in #3234
Prepare for 2.51.1 Release by @mathomp4 in #3236
Auto GitFlow - main → develop by @github-actions in #3235

Full Changelog: v2.51.0...v2.51.1

Contributors

mathomp4 and atrayano

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06 Dec 18:54

mathomp4

v2.51.0

7f63dbe

MAPL 2.51.0

This release of MAPL has many new updates and changes. Some highlights include:

Support for the Intel ifx compiler (including in CI)
- Note that MAPL Unit tests only work with ifx 2025.0, though 2024.2 can work with GEOSgcm
Allow lat-lon grid factory to detect and use CF compliant lat-lon bounds in a file when making a grid
Added a call in GenericRefresh to allow GC's refresh method to be called; in support of CICE6 rewind
Add ability to use an ESMF_CONFIG_FILE environment variable to specify name of file to pass in pre-ESMF_Initialize options to ESMF (see ESMF Docs for allowed flags)
Added commandline options to checkpoint_benchmark.x and restart_benchmark.x to allow for easier testing of different configurations. Note that the old configuration file style of input is allowed via the --config_file option (which overrides any other command line options)
Fixed issue of some Baselibs builds appearing to support zstandard. This is not possible due to Baselibs building HDF5 and netCDF as static libraries
Preliminary support for llvm-flang
- NOTE: MAPL does not yet work with llvm-flang. But some updates were added here for development testing.
Trajectory sampler: fix a bug when group_name does not exist in netCDF file and a bug that omitted the first time point
Fixed a bug where the periodicity around the earth of the lat-lon grid was not being set properly when grid did not span from pole to pole

There are also new build requirements for MAPL 2.51:

CMake 3.24
ESMF 8.6.1

All tests show this to be zero-diff to MAPL 2.50

This version of MAPL was tested with:

Intel Fortran Classic (ifort) 2021.6.0 and 2021.13
Intel Fortran (ifx) 2025.0
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.27.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.7.0 (Note: MAPL only requires 8.6.1 at the moment)
- GFE 1.16.0
  - gFTL 1.14.0
  - gFTL-shared 1.9.0
  - pFUnit 4.10.0 (optional)
  - fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.55.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.24 or higher.

From `CHANGELOG.md`

Added

Added macro _RETURN(_SUCCESS) to fetch_data
Allow update offsets of ±timestep in ExtData2G
Minor revision (and generalization) of grid-def for GSI purposes
Add ability to use an ESMF_CONFIG_FILE environment variable to specify name of file to pass in pre-ESMF_Initialize options to ESMF (see ESMF Docs for allowed flags.
Allow lat-lon grid factory to detect and use CF compliant lat-lon bounds in a file when making a grid
PFIO/Variable class, new procedures to retrieve string/reals/int attributes from a variable
Added a call in GenericRefresh to allow GC's refresh method to be called; in support
of CICE6 rewind

Changed

Change minimum CMake version to 3.24
- This is needed for f2py and meson support
Refactored tableEnd check
Added commandline options to checkpoint_benchmark.x and restart_benchmark.x to allow for easier testing of different configurations. Note that the old configuration file style of input is allowed via the --config_file option (which overrides any other command line options)
Update ESMF version for Baselibs to match that of Spack for consistency
Update components.yaml
- ESMA_env v4.32.0
  - Baselibs 7.27.0
    - ESMF 8.7.0
    - curl 8.10.1
    - NCO 5.2.8
    - CDO 2.4.4
    - GSL 2.8
    - jpeg 9f
    - Various build fixes
- ESMA_cmake v3.55.0
  - Fixes for using MAPL as a library in spack builds of GEOSgcm
  - Various backports from v4
  - Code for capturing mepo status output
  - Fixes for f2py and meson (NOTE: Requires CMake minimum version of 3.24 in project for complete functionality)
  - Fixes for MPI_STACK code run multiple times
Updates to CI
- Use v7.27.0 Baselibs
- Use GCC 14 for GNU tests
- Add pFUnit-less build test
- Enable ifx tests
Improve some writes to be more informative
- In base/MAPL_CFIO.F90, added Iam to a print statement so that when a read fails we know which routine failed
- In gridcomps/ExtData2G/ExtDataConfig.F90, print out the name of the duplicate collection that causes model to fail

Fixed

Fixed issue of some Baselibs builds appearing to support zstandard. This is not possible due to Baselibs building HDF5 and netCDF as static libraries
Workaround ifx bug in pfio/ArrayReference.F90 (NOTE: This currently targets all versions of ifx, but will need to be qualified or removed in the future)
Updates to support llvm-flang
Trajectory sampler: fix a bug when group_name does not exist in netCDF file and a bug that omitted the first time point
Fixed a bug where the periodicity around the earth of the lat-lon grid was not being set properly when grid did not span from pole to pole

What's Changed

Allow update offsets based on timestep for extdata2g by @darianboggs in #3099
Turn off zstandard with Baselibs by @mathomp4 in #3098
Auto GitFlow - main → develop by @github-actions in #3110
Update to ESMA_env v4.31.0 (ESMF 8.7.0) by @mathomp4 in #3114
This grid-def file is used in GSI by @rtodling in #3120
Update CI to use Baselibs 7.27.0 by @mathomp4 in #3116
Auto GitFlow - main → develop by @github-actions in #3134
Update to use GCC 14 in CI GNU runs by @mathomp4 in #3138
Add options to benchmark scripts by @mathomp4 in #3097
Add CMake to skip ExtData2G unit test if pfunit not found by @mathomp4 in #3157
Trajectory sampler: minor bug fix by @metdyn in #3168
check tableEnd efficiently by @weiyuan-jiang in #3178
CI changes for GEOSadas by @mathomp4 in #3197
Updates for f2py-meson support by @mathomp4 in #3202
Auto GitFlow - main → develop by @github-actions in #3208
Feature/bmauer/fixes #3210 by @bena-nasa in #3211
Feature/fixes #3175 by @bena-nasa in #3212
Fix up CI image code by @mathomp4 in #3214
Added return to fetch_data by @weiyuan-jiang in #3179
More informative error messages by @AgilentGCMS in #3161
Fixes #2845. Allow ESMF_CONFIG_FILE to specify ESMF control file by @mathomp4 in #3174
WIP: Fixes needed for flang by @mathomp4 in #3176
Workaround for ifx bug by @mathomp4 in #3185
support for CICE6(or others) to rewind by @zhaobin74 in #2982
Prepare for 2.51.0 Release by @mathomp4 in #3224
GitFlow: Merge develop into main for 2.51 release by @mathomp4 in #3226

New Contributors

@rtodling made their first contribution in #3120
@AgilentGCMS made their first contribution in #3161
@zhaobin74 made their first contribution in #2982

Full Changelog: v2.50.3...v2.51.0

Contributors

mathomp4, AgilentGCMS, and 6 other contributors

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03 Dec 14:31

mathomp4

v2.50.3

7eb7786

MAPL 2.50.3

This patch release of MAPL 2.50 fixes a bug where c NULL character is not removed from end of string when reading netcdf attribute in NetCDF4_FileFormatter.F90

All testing shows this to be zero-diff to MAPL 2.50.2.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
  - gFTL 1.14.0
  - gFTL-shared 1.9.0
  - pFUnit 4.10.0 (optional)
  - fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.23 or higher.

From `CHANGELOG.md`

Fixed

Fixed bug where c null character is not removed from end of string when reading netcdf attribute in NetCDF4_FileFormatter.F90

What's Changed

fixes #3201 by @bena-nasa in #3203

Full Changelog: v2.50.2...v2.50.3

Contributors

bena-nasa

Assets 3

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15 Nov 17:10

mathomp4

v2.40.3.1

c47252d

MAPL 2.40.3.1

NOTE: This is a special tweak release of MAPL 2.40.3. We do not recommend users use this version unless specifically told to.

This version of MAPL is essentialy v2.40.3 but with changes and fixes for ESMF 8.6.1 backported from newer tags. Thus, unlike MAPL 2.40.3, this version requires at least ESMF 8.6.1 (due to CMake changes).

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.14.0
- netcdf-c 4.9.2 (Needed for quantize support, but not required for all of MAPL)
- netcdf-fortran 4.6.1 (Needed for quantize support, but not required for all of MAPL)
- ESMF 8.6.1
- GFE 1.11.0
  - gFTL 1.10.0
  - gFTL-shared 1.6.1
  - pFUnit 4.7.3 (optional)
  - fArgParse 1.5.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.9.5 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
  - FLAP geos/v1.10.0 (if -DBUILD_WITH_FLAP=YES, default=NO)

Also, if you build with -DUSE_F2PY=ON, you will need:

ESMA_cmake v3.31.1

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Backport changes to use ESMF 8.6.1 to 2.40.3
- Update to use ESMF::ESMF target
- Update to ESMF 8.6.1 FindESMF.cmake file
- Remove excessive prints in generic/OpenMP_Support.F90

Full Changelog: v2.40.3...v2.40.3.1

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30 Oct 12:59

mathomp4

v2.50.2

306ca39

MAPL 2.50.2

This patch release of MAPL 2.50 fixes a bug with the placement of a cycle in a coupler loop in History. This bug was exposed in the pert code used in GEOSadas.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
  - gFTL 1.14.0
  - gFTL-shared 1.9.0
  - pFUnit 4.10.0 (optional)
  - fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.23 or higher.

From `CHANGELOG.md`

Fixed

Fixed bug with cycle placement in coupler loop in History

What's Changed

fixes #3131 by @bena-nasa in #3132

Full Changelog: v2.50.1...v2.50.2

Contributors

bena-nasa

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28 Oct 20:46

mathomp4

v2.47.1.2

6f698af

MAPL 2.47.1.2

This is a tweak patch on top of v2.47.1.1. It has a fix for a timer bug when using History and the GEOS Pert application.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.13 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
  - gFTL 1.13.0
  - gFTL-shared 1.8.0
  - pFUnit 4.9.0 (optional)
  - fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Fixed timer bug in History with GEOS pert application

Full Changelog: v2.47.1.1...v2.47.1.2

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24 Oct 19:04

mathomp4

v2.47.1.1

d8c5f0b

MAPL 2.47.1.1

This is a tweak release on MAPL v2.47.1 with a fix needed for GEOSadas development. It has a minor revision (and generalization) of MAPL_DefGridName for GSI purposes

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 (Classic 2021.13 seems to work, ifx does not yet work)
GCC 13.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below. NOTE: Changes here from MAPL 2.44 and earlier, namely GFE

Baselibs 7.24.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1b04 (8.6.0 is enough for Baselibs builds, but 8.6.1 is required for Spack)
- GFE 1.15.0
  - gFTL 1.13.0
  - gFTL-shared 1.8.0
  - pFUnit 4.9.0 (optional)
  - fArgParse 1.7.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.46.0

We recommend most external users set -DUSE_F2PY=OFF

From `CHANGELOG.md`

Changed

Minor revision (and generalization) of grid-def for GSI purposes

Full Changelog: v2.47.1...v2.47.1.1

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18 Oct 19:27

mathomp4

v2.50.1

3baff6e

MAPL 2.50.1

This is a patch release on MAPL 2.50. It fixes an uninitialized variable found when running with GNU and ExtData2G when built with Debugging compiler options.

All tests show this is zero-diff to MAPL 2.50.0.

This version of MAPL was tested with:

Intel Fortran Classic 2021.6.0 and 2021.13 (Note: ifx does not yet work)
GCC 13.2.0 and 14.2.0
NAG 7.2

The libraries this version of MAPL is currently tested with are below.

Baselibs 7.25.0
- netcdf-c 4.9.2
- netcdf-fortran 4.6.1
- ESMF 8.6.1
- GFE 1.16.0
  - gFTL 1.14.0
  - gFTL-shared 1.9.0
  - pFUnit 4.10.0 (optional)
  - fArgParse 1.8.0 (if -DBUILD_WITH_FARGPARSE=YES, default=YES)
  - pFlogger 1.14.0 (if -DBUILD_WITH_PFLOGGER=YES, default=YES)
- UDUNITS2 2.28.8

Also, if you build with Baselibs and/or -DUSE_F2PY=ON, you should use (at least):

ESMA_cmake v3.51.0

We recommend most external users set -DUSE_F2PY=OFF

We also require CMake 3.23 or higher.

From `CHANGELOG.md`

Fixed

Fixed unitialized variable bug in ExtData exposed by gfortran

What's Changed

Fixes #3073 by @bena-nasa in #3107

Full Changelog: v2.50.0...v2.50.1

Contributors

bena-nasa

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