Fixes based on meeting (#76)

.github/workflows/dockerhub.yml

@@ -34,6 +34,7 @@ jobs:
         with:
           ref: ${{ github.GITHUB_REF }}
 
+      # Log into the GitHub Container Registry so we can push the image
       - name: Log in to Container Registry
         uses: docker/login-action@v2
         with:
@@ -55,13 +56,17 @@ jobs:
             type=semver,pattern={{version}}
             type=raw,value=latest,enable=${{ startsWith(github.ref, 'refs/tags/') && endsWith(github.ref, 'master') }}
 
+      # What is QEMU?
+        # QEMU is a generic and open source machine emulator and virtualizer.
       - name: Set up QEMU
         uses: docker/setup-qemu-action@v2
+        with:
+          platforms: linux/amd64
 
       - name: Set up Docker Buildx
+        id: buildx
         uses: docker/setup-buildx-action@v2
 
-      # Fail if prehook not used
       - name: Set Up Python for Cleaning
         uses: actions/setup-python@v4
         with:
@@ -71,14 +76,15 @@ jobs:
           python -m pip install --upgrade nbstripout --no-cache-dir
           find /home/runner/work/MADRID/MADRID/ -name "*.ipynb" -exec nbstripout "{}" \;
 
-      # Fail if prehook not used
-      - name: Clean Notebook Output
+      - name: Assert Clean Notebook Output
         uses: ResearchSoftwareActions/[email protected]
 
       - name: Build and push
         uses: docker/build-push-action@v3
         with:
-          context: .
+          builder: ${{ steps.buildx.outputs.name }}
+          platforms: linux/amd64
+          file: ./Dockerfile
           push: true
           tags: ${{ steps.metadata.outputs.tags }}
           labels: ${{ steps.metadata.outputs.labels }}

main/py/async_bioservices/database_convert.py

@@ -75,6 +75,7 @@ def fetch_gene_info(
     :param taxon_id: The taxon ID to use (default: 9606)
     :return: A dataframe with specified columns as "output_db" (Default is HUGO symbol, Entrez ID, and chromosome start and end positions)
     """
+
     input_db_value = input_db.value
     if output_db is None: